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Hidden Markov models (HMMs) have been used increasingly to understand how movement patterns of animals arise from behavioural states. An animal is assumed to transition between behavioural states through time, as described by transition…

Quantitative Methods · Quantitative Biology 2025-10-07 Théo Michelot , Emma Storey

Ecologists often use a hidden Markov model to decode a latent process, such as a sequence of an animal's behaviours, from an observed biologging time series. Modern technological devices such as video recorders and drones now allow…

When analysing gene expression time series data an often overlooked but crucial aspect of the model is that the regulatory network structure may change over time. Whilst some approaches have addressed this problem previously in the…

Molecular Networks · Quantitative Biology 2012-03-05 Thomas Thorne , Michael P. H Stumpf

We introduce a new graphical model for tracking radio-tagged animals and learning their movement patterns. The model provides a principled way to combine radio telemetry data with an arbitrary set of userdefined, spatial features. We…

Machine Learning · Computer Science 2012-03-19 Berk Kapicioglu , Robert E. Schapire , Martin Wikelski , Tamara Broderick

Most animals possess the ability to actuate a vast diversity of movements, ostensibly constrained only by morphology and physics. In practice, however, a frequent assumption in behavioral science is that most of an animal's activities can…

Quantitative Methods · Quantitative Biology 2014-08-13 Gordon J. Berman , Daniel M. Choi , William Bialek , Joshua W. Shaevitz

1. Electronic telemetry is frequently used to document animal movement through time. Methods that can identify underlying behaviors driving specific movement patterns can help us understand how and why animals use available space, thereby…

Recent developments in automated tracking allow uninterrupted, high-resolution recording of animal trajectories, sometimes coupled with the identification of stereotyped changes of body pose or other behaviors of interest. Analysis and…

Populations and Evolution · Quantitative Biology 2018-07-04 Katarina Bodova , Gabriel J. Mitchell , Roy Harpaz , Elad Schneidman , Gasper Tkacik

The behaviour of colony-based marine predators is the focus of much research globally. Large telemetry and tracking data sets have been collected for this group of animals, and are accompanied by many theoretical studies of optimal foraging…

Quantitative Methods · Quantitative Biology 2017-04-26 Théo Michelot , Roland Langrock , Sophie Bestley , Ian D. Jonsen , Theoni Photopoulou , Toby A. Patterson

Hidden Markov models (HMMs) are a versatile statistical framework commonly used in ecology to characterize behavioural patterns from animal movement data. In HMMs, the observed data depend on a finite number of underlying hidden states,…

Methodology · Statistics 2024-12-24 Fanny Dupont , Marianne Marcoux , Nigel Hussey , Marie Auger-Méthé

Learning the activities of animals is important for the purpose of monitoring their welfare vis a vis their behaviour with respect to their environment and conspecifics. While previous works have largely focused on activity recognition in a…

Machine Learning · Computer Science 2018-11-26 Kehinde Owoeye , Stephen Hailes

The social structure of an animal population can often influence movement and inform researchers on a species' behavioral tendencies. Animal social networks can be studied through movement data; however, modern sources of data can have…

With the influx of complex and detailed tracking data gathered from electronic tracking devices, the analysis of animal movement data has recently emerged as a cottage industry amongst biostatisticians. New approaches of ever greater…

Applications · Statistics 2017-01-31 Toby A Patterson , Alison Parton , Roland Langrock , Paul G Blackwell , Len Thomas , Ruth King

Hidden Markov models have successfully been applied as models of discrete time series in many fields. Often, when applied in practice, the parameters of these models have to be estimated. The currently predominating identification methods,…

Machine Learning · Statistics 2015-07-24 Robert Mattila , Cristian R. Rojas , Bo Wahlberg

This study examines the complex movement patterns and behavioral characteristics of wild boars using GPS telemetry data collected over a two-month period. Our methodological approach centers on the application of a Hidden Markov Model (HMM)…

The use of accelerometers in wildlife tracking provides a fine-scale data source for understanding animal behavior and decision-making. Current methods in movement ecology focus on behavior as a driver of movement mechanisms. Our Markov…

New types of high-resolution animal movement data allow for increasingly comprehensive biological inference, but method development to meet the statistical challenges associated with such data is lagging behind. In this contribution, we…

Methodology · Statistics 2025-07-08 Ferdinand V. Stoye , Annika Hoyer , Roland Langrock

Learning and understanding the typical patterns in the daily activities and routines of people from low-level sensory data is an important problem in many application domains such as building smart environments, or providing intelligent…

Machine Learning · Computer Science 2014-08-14 Truyen Tran , Hung Bui , Svetha Venkatesh

Multi-animal pose estimation is essential for studying animals' social behaviors in neuroscience and neuroethology. Advanced approaches have been proposed to support multi-animal estimation and achieve state-of-the-art performance. However,…

Computer Vision and Pattern Recognition · Computer Science 2022-04-15 Ari Blau , Christoph Gebhardt , Andres Bendesky , Liam Paninski , Anqi Wu

Modern vehicles are equipped with increasingly complex sensors. These sensors generate large volumes of data that provide opportunities for modeling and analysis. Here, we are interested in exploiting this data to learn aspects of behaviors…

Machine Learning · Statistics 2018-01-30 Vadim Smolyakov , Julian Straub , Sue Zheng , John W. Fisher

Understanding disease dynamics is crucial for managing wildlife populations and assessing spillover risk to domestic animals and humans, but infection data on free-ranging animals are difficult to obtain. Because pathogen and parasite…

Quantitative Methods · Quantitative Biology 2025-09-26 Dongmin Kim , Théo Michelot , Katherine Mertes , Jared A. Stabach , John Fieberg