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The minimal 3-state scheme of kinetic cooperativity of monomeric enzymes is subjected to detailed analysis. The rigorous criteria of positive cooperativity and its sigmoidal version are established in terms of the system parameters (rate…
Stochastic and coherence resonances appear in nonlinear systems subjected to an external source of noise and are characterized by a maximum response at the optimal value of the noise intensity. This paper shows experimentally that it is…
We show that noise-induced oscillations in a gene circuit model display stochastic coherence, that is, a maximum in the regularity of the oscillations as a function of noise amplitude. The effect is manifest as a system-size effect in a…
We study a reaction model that presents stochastic resonance purely due to internal noise. This means that the only source of fluctuations comes from the discrete character of the reactants, and no more noises enter into the system. Our…
It is shown that coherence resonance, a phenomenon in which regularity of noise-induced oscillations in nonlinear excitable systems is maximized at a certain optimal noise intensity, can be observed in quantum dissipative systems. We…
Several studies have developed dynamical models to understand the underlying mechanisms of insulin signaling, a signaling cascade that leads to the translocation of glucose, the human body's main source of energy. Fortunately, reaction…
The magnetic susceptibility measured in neutron scattering experiments in underdoped YBa$_2$Cu$_3$O$_{7-y}$ is interpreted based on the self-consistent solution of the t-J model of a Cu-O plane. The calculations reproduce correctly the…
We discuss in detail a human scale example of the synchronization phenomenon, namely the dynamics of the rhythmic applause. After a detailed experimental investigation, we describe the phenomenon with an approach based on the classical…
We study the influence of correlations among discrete stochastic excitatory or inhibitory inputs on the response of the FitzHugh-Nagumo neuron model. For any level of correlation the emitted signal exhibits at some finite noise intensity a…
The goal of this paper is to outline a scenario of emerging stochasticity in high-dimensional highly nonlinear systems, such as genetic regulatory networks (GRN). We focus attention on the fact that in such systems confluence of all the…
Stochastic kinetic models of genetic expression are able to describe protein fluctuations. A comparative study of the canonical and a feedback model is given here by using stochastic simulation methods. The feedback model is skeleton model…
Cooperative interactions among the binding of multiple signaling molecules is a common mechanism for enhancing the sensitivity of biological signaling systems. It is widely assumed that this increase in sensitivity of the mean response…
A long standing debate in biochemistry is to determine whether the conformational changes observed during biomolecular interactions proceed through conformational selection (of preexisting isoforms) or induced fit (ligand-induced 3D…
The mechanism of high-Tc superconductivity is investigated with interests on the microscopic aspects of the condensation energy. The theoretical analysis is performed on the basis of the FLEX approximation which is a microscopic description…
The standard two-step model of homogeneous-catalyzed reactions had been theoretically analyzed at various levels of approximations from time to time. The primary aim was to check the validity of the quasi-steady-state approximation, and…
The system discussed recently in L. Cao and D. J. Wu, Europhys. Lett. {\bf 61}, (2003) 593 merely reproduces properties of the input signal.
The coherence resonance (CR) of globally coupled Hodgkin-Huxley neurons is studied. When the neurons are set in the subthreshold regime near the firing threshold, the additive noise induces limit cycles. The coherence of the system is…
We report a novel theoretical approach on the microwave-induced resistance oscillations based on the coherent states of the quantum harmonic oscillator. We first obtain an expression for the coherent states of driven-quantum harmonic…
We study the relationship between the collective phenomena of super and subradiance and spontaneous synchronization of quantum systems. To this aim we revisit the case of two detuned qubits interacting through a pure dissipative bosonic…
The peculiarities of coherent spin radiation by magnetic nanomolecules is investigated by means of numerical simulation. The consideration is based on a microscopic Hamiltonian taking into account realistic dipole interactions.…