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Sequencing by synthesis is used in many next-generation DNA sequencing technologies. Some of the technologies, especially those exploring the principle of single-molecule sequencing, allow incomplete nucleotide incorporation in each cycle.…

Genomics · Quantitative Biology 2024-05-28 Yong Kong

The phenomenon of solidification of a substance from its liquid phase is of the greatest practical and theoretical importance, and atomistic simulations can provide precious information towards its understanding and control. Unfortunately,…

Soft Condensed Matter · Physics 2021-03-25 Tarak Karmakar , Michele Invernizzi , Valerio Rizzi , Michele Parrinello

The problem of clustering is considered, for the case when each data point is a sample generated by a stationary ergodic process. We propose a very natural asymptotic notion of consistency, and show that simple consistent algorithms exist,…

Machine Learning · Computer Science 2013-05-01 Daniil Ryabko

The problem of clustering is considered, for the case when each data point is a sample generated by a stationary ergodic process. We propose a very natural asymptotic notion of consistency, and show that simple consistent algorithms exist,…

Machine Learning · Computer Science 2010-05-31 Daniil Ryabko

Efficiently and accurately determining the symmetry is a crucial step in the structural analysis of crystalline materials. Existing methods usually mindlessly apply deep learning models while ignoring the underlying chemical rules. More…

Machine Learning · Computer Science 2025-11-11 Liheng Yu , Zhe Zhao , Xucong Wang , Di Wu , Pengkun Wang

Spontaneous symmetry breaking plays a fundamental role in many areas of condensed matter and particle physics. A fundamental problem in ecology is the elucidation of the mechanisms responsible for biodiversity and stability. Neutral theory,…

Populations and Evolution · Quantitative Biology 2013-06-28 Claudio Borile , Miguel A. Muñoz , Sandro Azaele , Jayanth R. Banavar , Amos Maritan

A new approach is proposed to the integrated analysis of the time structure of synchronization of multidimensional chaotic systems. The method allows one to diagnose and quantitatively evaluate the intermittency characteristics during…

Chaotic Dynamics · Physics 2015-07-02 A. V. Makarenko

The problem of synchronization in heterogeneous networks of linear systems with nonlinear delayed diffusive coupling is considered. The network is presented in new coordinates mean-field dynamics and synchronization errors. Thus the problem…

Adaptation and Self-Organizing Systems · Physics 2022-05-11 Sergei A. Plotnikov

Astrophysical indications that the fine structure constant has undergone a small time variation during the cosmological evolution are discussed within the framework of the standard model of the electroweak and strong interactions and of…

High Energy Physics - Phenomenology · Physics 2009-11-07 Xavier Calmet , Harald Fritzsch

Quantum physics involves an ensemble of quantum systems, usually one thinks of a large ensemble of identical quantum systems at one single time. In single ion experiments one has a single quantum system at an ensemble of different times.…

Quantum Physics · Physics 2007-05-23 A. Bohm , H. Kaldass , S. Komy , W. P. Schleich

Non-aligning self-propelled particles with purely repulsive excluded volume interactions undergo athermal motility-induced phase separation into a dilute gas and a dense cluster phase. Here, we use enhanced sampling computational methods…

Soft Condensed Matter · Physics 2016-10-05 Gabriel S. Redner , Caleb G. Wagner , Aparna Baskaran , Michael F. Hagan

We study the relationship between synchronization and the rate with which information is exchanged between nodes in a spatio-temporal network that describes the dynamics of classical particles under a substrate Remoissenet-Peyrard…

Chaotic Dynamics · Physics 2009-11-13 F. M. Moukam Kakmeni , M. S. Baptista

Mining Time Series data has a tremendous growth of interest in today's world. To provide an indication various implementations are studied and summarized to identify the different problems in existing applications. Clustering time series is…

Information Retrieval · Computer Science 2010-05-25 V. Kavitha , M. Punithavalli

The mechanism of spontaneous symmetry breaking in quantum systems is briefly reviewed, rectifying part of the standard wisdom on logical and mathematical grounds. The crucial role of the localization properties of the time evolution for the…

History and Philosophy of Physics · Physics 2012-01-27 F. Strocchi

A novel mechanism for cell differentiation is proposed, based on the dynamic clustering in a globally coupled chaotic system. A simple model with metabolic reaction, active transport of chemicals from media, and cell division is found to…

adap-org · Physics 2009-10-22 Kunihiko Kaneko , Tetsuya Yomo

A systematic experimental study of dispersions of charged colloidal spheres is presented on the effect of steady shear flow on nucleation and crystal-growth rates. In addition, the non-equilibrium phase diagram as far as the melting line is…

Soft Condensed Matter · Physics 2016-08-31 P. Holmqvist , M. P. Lettinga , J. Buitenhuis , J. K. G. Dhont

Synchronization is a phenomenon where interacting particles lock their motion and display non-trivial dynamics. Despite intense efforts studying synchronization in systems without clear classical limits, no comprehensive theory has been…

Quantum Physics · Physics 2022-03-23 Berislav Buca , Cameron Booker , Dieter Jaksch

Synchronization among arrays of beating cilia is one of the emergent phenomena in biological processes at meso-scopic scales. Strong inter-ciliary couplings modify the natural beating frequencies, $\omega$, of individual cilia to produce a…

Statistical Mechanics · Physics 2021-06-09 Hyunsuk Hong , Junghyo Jo , Changbong Hyeon , Hyunggyu Park

The community structure of complex networks reveals both their organization and hidden relationships among their constituents. Most community detection methods currently available are not deterministic, and their results typically depend on…

Physics and Society · Physics 2012-03-29 Andrea Lancichinetti , Santo Fortunato

Studying the crystallization process of silicon is a challenging task since empirical potentials are not able to reproduce well the properties of both semiconducting solid and metallic liquid. On the other hand, nucleation is a rare event…

Computational Physics · Physics 2019-01-10 Luigi Bonati , Michele Parrinello
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