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Knowledge Graphs (KGs) have seen increasing use across various domains -- from biomedicine and linguistics to general knowledge modelling. In order to facilitate the analysis of knowledge graphs, Knowledge Graph Embeddings (KGEs) have been…

Machine Learning · Computer Science 2024-12-20 Jeffrey Sardina , John D. Kelleher , Declan O'Sullivan

Generative modeling frameworks have emerged as an effective approach to capture high-dimensional image distributions from large datasets without requiring domain-specific knowledge, a capability essential for longitudinal disease…

Computer Vision and Pattern Recognition · Computer Science 2025-11-11 Ayantika Das , Arunima Sarkar , Keerthi Ram , Mohanasankar Sivaprakasam

Knowledge Graphs (KG) and associated Knowledge Graph Embedding (KGE) models have recently begun to be explored in the context of drug discovery and have the potential to assist in key challenges such as target identification. In the drug…

Biomolecules · Quantitative Biology 2022-06-01 Stephen Bonner , Ian P Barrett , Cheng Ye , Rowan Swiers , Ola Engkvist , Charles Tapley Hoyt , William L Hamilton

In disentangled representation learning, the goal is to achieve a compact representation that consists of all interpretable generative factors in the observational data. Learning disentangled representations for graphs becomes increasingly…

Machine Learning · Computer Science 2023-11-20 Jingyun Feng , Lin Zhang , Lili Yang

Medical caption prediction which can be regarded as a task of medical report generation (MRG), requires the automatic generation of coherent and accurate captions for the given medical images. However, the scarcity of labelled medical…

Computer Vision and Pattern Recognition · Computer Science 2023-06-12 Bang Yang , Asif Raza , Yuexian Zou , Tong Zhang

Graphs are ubiquitous in real-world scenarios and encompass a diverse range of tasks, from node-, edge-, and graph-level tasks to transfer learning. However, designing specific tasks for each type of graph data is often costly and lacks…

Machine Learning · Computer Science 2024-03-22 Yulan Hu , Sheng Ouyang , Zhirui Yang , Ge Chen , Junchen Wan , Xiao Wang , Yong Liu

Electronic Health Records (EHRs) and routine documentation practices play a vital role in patients' daily care, providing a holistic record of health, diagnoses, and treatment. However, complex and verbose EHR narratives overload healthcare…

Computation and Language · Computer Science 2025-02-26 Yanjun Gao , Ruizhe Li , Emma Croxford , John Caskey , Brian W Patterson , Matthew Churpek , Timothy Miller , Dmitriy Dligach , Majid Afshar

Graph embedding is a powerful method to represent graph neurological data (e.g., brain connectomes) in a low dimensional space for brain connectivity mapping, prediction and classification. However, existing embedding algorithms have two…

Computer Vision and Pattern Recognition · Computer Science 2020-09-25 Alin Banka , Inis Buzi , Islem Rekik

Biological systems are governed by structured molecular interactions, where pathways, regulatory circuits, and functional gene relationships shape cellular behavior and disease progression. Much of this knowledge is naturally represented as…

Machine Learning · Computer Science 2026-05-26 Yuwei Xue , Sakib Mostafa , James Zou , Joseph Liao , Maximilian Diehn , Ash A. Alizadeh , Lei Xing , Md. Tauhidul Islam

Scene graph generation (SGG) has gained tremendous progress in recent years. However, its underlying long-tailed distribution of predicate classes is a challenging problem. For extremely unbalanced predicate distributions, existing…

Computer Vision and Pattern Recognition · Computer Science 2023-01-03 Liguang Zhou , Yuhongze Zhou , Tin Lun Lam , Yangsheng Xu

Unsupervised graph representation learning aims to distill various graph information into a downstream task-agnostic dense vector embedding. However, existing graph representation learning approaches are designed mainly under the node…

Machine Learning · Computer Science 2022-03-04 You Li , Bei Lin , Binli Luo , Ning Gui

Knowledge graph (KG) alignment and completion are usually treated as two independent tasks. While recent work has leveraged entity and relation alignments from multiple KGs, such as alignments between multilingual KGs with common entities…

Computation and Language · Computer Science 2022-10-19 Vinh Tong , Dat Quoc Nguyen , Trung Thanh Huynh , Tam Thanh Nguyen , Quoc Viet Hung Nguyen , Mathias Niepert

Despite the suitability of graphs for capturing the relational structures inherent in architectural layout designs, there is a notable dearth of research on interpreting architectural design space using graph-based representation learning…

Machine Learning · Computer Science 2024-06-26 Jielin Chen , Rudi Stouffs

Knowledge graphs, as the cornerstone of many AI applications, usually face serious incompleteness problems. In recent years, there have been many efforts to study automatic knowledge graph completion (KGC), most of which use existing…

Computation and Language · Computer Science 2022-10-13 Xin Lv , Yankai Lin , Zijun Yao , Kaisheng Zeng , Jiajie Zhang , Lei Hou , Juanzi Li

Knowledge graph simple question answering (KGSQA), in its standard form, does not take into account that human-curated question answering training data only cover a small subset of the relations that exist in a Knowledge Graph (KG), or even…

Computation and Language · Computer Science 2020-05-26 Georgios Sidiropoulos , Nikos Voskarides , Evangelos Kanoulas

Automatic generation of radiology reports holds crucial clinical value, as it can alleviate substantial workload on radiologists and remind less experienced ones of potential anomalies. Despite the remarkable performance of various image…

Computer Vision and Pattern Recognition · Computer Science 2023-11-02 Qingqiu Li , Jilan Xu , Runtian Yuan , Mohan Chen , Yuejie Zhang , Rui Feng , Xiaobo Zhang , Shang Gao

Knowledge graph embedding (KGE), aiming to embed entities and relations into low-dimensional vectors, has attracted wide attention recently. However, the existing research is mainly based on the black-box neural models, which makes it…

Computation and Language · Computer Science 2020-11-13 Xiaoyu Kou , Yankai Lin , Yuntao Li , Jiahao Xu , Peng Li , Jie Zhou , Yan Zhang

Autoencoders based on Graph Neural Networks (GNNs) have garnered significant attention in recent years for their ability to extract informative latent representations, characterizing the structure of complex topologies, such as graphs.…

Knowledge graph (KG) embedding encodes the entities and relations from a KG into low-dimensional vector spaces to support various applications such as KG completion, question answering, and recommender systems. In real world, knowledge…

Databases · Computer Science 2022-06-02 Tianxing Wu , Arijit Khan , Melvin Yong , Guilin Qi , Meng Wang

Combining Generative Adversarial Networks (GANs) with encoders that learn to encode data points has shown promising results in learning data representations in an unsupervised way. We propose a framework that combines an encoder and a…

Computer Vision and Pattern Recognition · Computer Science 2018-03-08 Tobias Hinz , Stefan Wermter
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