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Related papers: Sustained Order-Disorder Transitions in a Model Co…

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Disordered systems like liquids, gels, glasses, or granular materials are not only ubiquitous in daily life and in industrial applications but they are also crucial for the mechanical stability of cells or the transport of chemical and…

Disordered Systems and Neural Networks · Physics 2019-04-30 Zhen Zhang , Walter Kob

We study explosive synchronization, a phenomenon characterized by first-order phase transitions between incoherent and synchronized states in networks of coupled oscillators. While explosive synchronization has been the subject of many…

Adaptation and Self-Organizing Systems · Physics 2014-08-22 Per Sebastian Skardal , Alex Arenas

We study the order-disorder transition in colloidal suspensions under shear flow by performing Brownian dynamics simulations. We characterize the transition in terms of a statistical property of time-dependent maximum value of the structure…

Statistical Mechanics · Physics 2008-05-14 Masamichi J. Miyama , Shin-ichi Sasa

Synchronization of non-identical oscillators coupled through complex networks is an important example of collective behavior. It is interesting to ask how the structural organization of network interactions influences this process. Several…

Adaptation and Self-Organizing Systems · Physics 2017-09-13 Lia Papadopoulos , Jason Kim , Jurgen Kurths , Danielle S. Bassett

In this study, under general frame of MAny Connected Intelligent Particles Systems (MACIPS), we reproduce two new simple subsets of such intelligent complex network, namely hybrid intelligent systems, involved a few prominent intelligent…

Artificial Intelligence · Computer Science 2010-01-10 Hamed Owladeghaffari

Biochemical oscillations are ubiquitous in nature and allow organisms to properly time their biological functions. In this paper, we consider minimal Markov state models of nonequilibrium biochemical networks that support oscillations. We…

Statistical Mechanics · Physics 2020-02-04 Clara del Junco , Suriyanarayanan Vaikuntanathan

Spatiotemporal disorder has been recently associated to the occurrence of anomalous nonergodic diffusion of molecular components in biological systems, but the underlying microscopic mechanism is still unclear. We introduce a model in which…

Statistical Mechanics · Physics 2017-03-15 C. Charalambous , G. Muñoz-Gil , A. Celi , M. F. Garcia-Parajo , M. Lewenstein , C. Manzo , M. A. García-March

We study how dispersions of colloidal particles in a cholesteric liquid crystal behave under a time-dependent electric field. By controlling the amplitude and shape of the applied field wave, we show that the system can be reproducibly…

Soft Condensed Matter · Physics 2015-05-05 Giuseppe D'Adamo , D. Marenduzzo , C. Micheletti , E. Orlandini

Compliant environments can mediate interactions between mechanically active cells like fibroblasts. Starting with a phenomenological model for the behaviour of single cells, we use extensive Monte Carlo simulations to predict non-trivial…

Soft Condensed Matter · Physics 2007-05-23 I. B. Bischofs , U. S. Schwarz

The conventional wisdom is that liquids are completely disordered and lack non-trivial structure beyond nearest-neighbor distances. Recent observations have upended this view and demonstrated that the microstructure in liquids is…

Soft Condensed Matter · Physics 2023-02-13 Navneet Singh , Zhen Zhang , A. K. Sood , Walter Kob , Rajesh Ganapathy

We investigate the trends of information backflow associated with the dynamics of a sub-part of a disordered spin-1/2 transverse field Heisenberg chain for different regimes of the Hamiltonian. Towards this aim, the decay profile of…

Quantum Physics · Physics 2020-03-16 Sudipto Singha Roy , Utkarsh Mishra , Debraj Rakshit

Active particles such as swimming bacteria or self-propelled colloids are known to spontaneously organize into fascinating large-scale dynamic structures. The emergence of these collective states from the motility pattern of the individual…

Soft Condensed Matter · Physics 2019-11-20 Hamid Karan , Gerardo E. Pradillo , Petia M. Vlahovska

Colloidal particles moving in a fluid interact via the induced velocity field. The collective dynamic state for a class of actively forced colloids, driven by harmonic potentials via a rule that couples forces to configurations, to perform…

Soft Condensed Matter · Physics 2011-10-11 Loïc Damet , Giovanni M. Cicuta , Jurij Kotar , Marco Cosentino Lagomarsino , Pietro Cicuta

Automated verification of living organism models allows us to gain previously unknown knowledge about underlying biological processes. In this paper, we show the benefits to use parametric time Petri nets in order to analyze precisely the…

Logic in Computer Science · Computer Science 2015-06-23 Alexander Andreychenko , Morgan Magnin , Katsumi Inoue

Limit cycles are self-sustained, closed trajectories in phase space representing (un)-stable, periodic behavior in nonlinear dynamical systems. They underpin diverse natural phenomena, from neuronal firing patterns to engineering…

Adaptation and Self-Organizing Systems · Physics 2025-08-15 Sandip Saha , Suvam Pal , Dibakar Ghosh

Many natural systems, such as neurons firing in the brain or basketball teams traversing a court, give rise to time series data with complex, nonlinear dynamics. We can gain insight into these systems by decomposing the data into segments…

Biological rhythms are generated by pacemaker organs, such as the heart pacemaker organ (the sinoatrial node) and the master clock of the circadian rhythms (the suprachiasmatic nucleus), which are composed of a network of autonomously…

Cell Behavior · Quantitative Biology 2016-08-23 Hiroshi Kori , Yoji Kawamura , Naoki Masuda

We present a model for disordered 3D fiber networks to study their linear and nonlinear elasticity over a wide range of network densities and fiber lengths. In contrast to previous 2D models, these 3D networks with binary cross-links are…

Soft Condensed Matter · Physics 2015-05-30 C. P. Broedersz , M. Sheinman , F. C. MacKintosh

Multiple dissipative self-assembly protocols designed to create novel structures or to reduce kinetic traps have recently emerged. Specifically, temporal oscillations of particle interactions have been shown effective at both aims, but…

Soft Condensed Matter · Physics 2024-10-25 Jessica K. Niblo , Jacob R. Swartley , Zhongmin Zhang , Kateri H. DuBay

We study the versatile performance of networks of coupled circuits. Each of these circuits is composed of a positive and a negative feedback loop in a motif that is frequently found in genetic and neural networks. When two of these circuits…

Adaptation and Self-Organizing Systems · Physics 2015-06-22 Darka Labavić , Hildegard Meyer-Ortmanns