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Biological information processing is often carried out by complex networks of interconnected dynamical units. A basic question about such networks is that of reliability: if the same signal is presented many times with the network in…

Chaotic Dynamics · Physics 2015-06-11 Guillaume Lajoie , Kevin K. Lin , Eric Shea-Brown

Ring, or cyclic, polymers have unique properties compared to linear polymers, due to their topologically closed structure that has no beginning or end. Experimental measurements on molecular ring polymers are challenging due to their…

Soft Condensed Matter · Physics 2023-03-15 Ruben Verweij , Julio Melio , Indrani Chakraborty , Daniela J Kraft

We investigate dynamical systems characterized by a time series of distinct semi-stable activity patterns, as they are observed in cortical neural activity patterns. We propose and discuss a general mechanism allowing for an adiabatic…

Disordered Systems and Neural Networks · Physics 2010-02-11 Claudius Gros

Colloids that attractively bond to only a few neighbors (e.g., patchy particles) can form equilibrium gels with distinctive dynamic properties that are stable in time. Here, we use a coarse-grained model to explore the dynamics of linked…

Soft Condensed Matter · Physics 2022-11-09 Taejin Kwon , Tanner A. Wilcoxson , Delia J. Milliron , Thomas M. Truskett

There is enormous interest -- both mathematically and in diverse applications -- in understanding the dynamics of coupled oscillator networks. The real-world motivation of such networks arises from studies of the brain, the heart, ecology,…

Dynamical Systems · Mathematics 2023-08-22 Stephen Coombes , Mustafa Sayli , Rüdiger Thul , Rachel Nicks , Mason A Porter , Yi Ming Lai

We investigate the behavior of colloidal suspensions with different volume fractions confined between parallel walls under a range of steady shears. We model the particles using molecular dynamics (MD) with full hydrodynamic interactions…

Soft Condensed Matter · Physics 2014-09-18 Frances E. Mackay , Kyle Pastor , Mikko Karttunen , Colin Denniston

We study the collective behaviour of an ensemble of coupled motile elements whose interactions depend on time and are alternatively attractive or repulsive. The evolution of interactions is driven by individual internal variables with…

Statistical Mechanics · Physics 2009-11-10 Damian H. Zanette , Alexander S. Mikhailov

Much work has studied effective interactions between micron-sized particles carrying linkers forming reversible, inter-particle linkages. These studies allowed understanding the equilibrium properties of colloids interacting through…

Soft Condensed Matter · Physics 2019-12-11 Pritam Kumar Jana , Bortolo Matteo Mognetti

The theory of mixed-feedback systems provides an effective framework for the design of robust and tunable oscillations in nonlinear systems characterized by interleaved fast positive and slow negative feedback loops. The goal of this paper…

Dynamical Systems · Mathematics 2024-12-11 Omar Juarez-Alvarez , Alessio Franci

Functional brain networks can change rapidly as a function of stimuli or cognitive shifts. Tracking dynamic functional connectivity is particularly challenging as it requires estimating the structure of the network at each moment as well as…

Methodology · Statistics 2024-04-30 Wan-Chi Hsin , Uri T. Eden , Emily P. Stephen

We investigate a 2D dynamical absorbing state model of monodisperse disks, in which rich phase behavior arises from interactions consisting solely of repulsive displacements between overlapping particles. The phase diagram reveals several…

Soft Condensed Matter · Physics 2025-12-23 Ashley Z. Guo , Sam Wilken , Dov Levine , Paul M. Chaikin

Normal modes provide a fundamental basis for understanding crucial properties of solids, such as the thermal conductivity, the heat capacity and the sound propagation. While the normal modes are excellently described by plane waves in…

Soft Condensed Matter · Physics 2011-04-04 Peng Tan , Ning Xu , A. B. Schofield , Lei Xu

We study colloidal ordering and disordering on two-dimensional periodic substrates where the number of colloids per substrate minima is two or three. The colloids form dimer or trimer states with orientational ordering, referred to as…

Soft Condensed Matter · Physics 2009-11-10 M. Mikulis , C. J. Olson Reichhardt , C. Reichhardt , R. T. Scalettar , G. T. Zimanyi

Anticipating bifurcation-induced transitions in dynamical systems has gained relevance in various fields of the natural, social, and economic sciences. Before the annihilation of a system's equilibrium point by means of a bifurcation, the…

Dynamical Systems · Mathematics 2024-09-06 Andreas Morr , Keno Riechers , Leonardo Rydin Gorjão , Niklas Boers

Social dynamics on a network may be accelerated or decelerated depending on which pairs of individuals in the network communicate early and which pairs do later. The order with which the links in a given network are sequentially used, which…

Physics and Society · Physics 2016-03-18 Naoki Masuda

According to empirical observations, some pattern formation phenomena in driven many-particle systems are more pronounced in the presence of a certain noise level. We investigate this phenomenon of fluctuation-driven ordering with a…

Statistical Mechanics · Physics 2009-11-07 Dirk Helbing , Tadeusz Platkowski

Spatio-temporal network dynamics is an emergent property of many complex systems which remains poorly understood. We suggest a new approach to its study based on the analysis of dynamical motifs -- small subnetworks with periodic and…

Disordered Systems and Neural Networks · Physics 2007-05-23 Valentin P. Zhigulin

Mixed-order phase transitions display a discontinuity in the order parameter like first-order transitions yet feature critical behavior like second-order transitions. Such transitions have been predicted for a broad range of equilibrium and…

Statistical Mechanics · Physics 2017-12-07 Ricard Alert , Pietro Tierno , Jaume Casademunt

We study the phase diagrams and thermodynamic properties of a system of coexisting itinerant electrons and local pairs (LP), in the presence of diagonal disorder. The model considered takes into account both the charge exchange couplings,…

Superconductivity · Physics 2007-05-23 Stanisław Robaszkiewicz , Grzegorz Pawłowski

Self-organized criticality is a well-established phenomenon, where a system dynamically tunes its structure to operate on the verge of a phase transition. Here, we show that the dynamics inside the self-organized critical state are…

Adaptation and Self-Organizing Systems · Physics 2025-08-19 Silja Sormunen , Thilo Gross , Jari Saramäki