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Related papers: Predicting Antimicrobial Resistance in the Intensi…

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Can we understand and predict the evolutionary pathways by which bacteria acquire multi-drug resistance (MDR)? These questions have substantial potential impact in basic biology and in applied approaches to address the global health…

Populations and Evolution · Quantitative Biology 2024-11-05 Jessica Renz , Kazeem A. Dauda , Olav N. L. Aga , Ramon Diaz-Uriarte , Iren H. Löhr , Bjørn Blomberg , Iain G. Johnston

Whole genome sequencing (WGS) is quickly becoming the customary means for identification of antimicrobial resistance (AMR) due to its ability to obtain high resolution information about the genes and mechanisms that are causing resistance…

Genomics · Quantitative Biology 2021-07-27 Mattia Prosperi , Simone Marini , Christina Boucher , Jiang Bian

Purpose: Antimicrobial resistance is a major global health concern, affecting hospital admissions and treatment success. This study aims to introduce an experimental setup for monitoring bacterial activity over time using image-based…

Quantitative Methods · Quantitative Biology 2025-06-12 M. A. Gameiro , R. F. Pinto , N. V. Lopes

Antimicrobial Resistance represents a significant challenge in the Intensive Care Unit (ICU), where patients are at heightened risk of Multidrug-Resistant (MDR) infections-pathogens resistant to multiple antimicrobial agents. This study…

The growing threat of antibiotic resistance necessitates accurate differentiation between bacterial and viral infections for proper antibiotic administration. In this study, a Virus vs. Bacteria machine learning model was developed to…

Recently, Antimicrobial peptides (AMPs) have been an area of interest in the researches, as the first line of defense against the bacteria. They are raising attention as an efficient way of fighting multidrug resistance. Discovering and…

Quantitative Methods · Quantitative Biology 2020-05-06 Neda Zarayeneh , Zahra Hanifeloo

Antimicrobial resistance (AMR) is escalating and outpacing current antibiotic development. Thus, discovering antibiotics effective against emerging pathogens is becoming increasingly critical. However, existing approaches cannot rapidly…

Machine Learning · Computer Science 2025-07-11 Tianang Leng , Fangping Wan , Marcelo Der Torossian Torres , Cesar de la Fuente-Nunez

Antimicrobial Resistance (AMR) is a rapidly escalating global health crisis. While genomic sequencing enables rapid prediction of resistance phenotypes, current computational methods have limitations. Standard machine learning models treat…

Machine Learning · Computer Science 2025-09-30 Md. Saiful Bari Siddiqui , Nowshin Tarannum

Antimicrobial susceptibility testing (AST) is a standard clinical procedure used to quantify antimicrobial resistance (AMR). Currently, the gold standard method requires incubation for 18-24 h and subsequent inspection for growth by a…

Antibiotic resistance, which is a serious healthcare issue, emerges due to uncontrolled and repeated antibiotic use that causes bacteria to mutate and develop resistance to antibiotics. The Antibiotics Time Machine Problem aims to come up…

Optimization and Control · Mathematics 2025-01-22 Deniz Tuncer , Burak Kocuk

Cross-species antimicrobial resistance (AMR) prediction is fundamentally an out-of-distribution (OOD) generalization problem: models trained on one set of bacterial taxa must transfer to phylogenetically distinct genomes that may rely on…

Genomics · Quantitative Biology 2026-03-13 Huilin Tai

Antibiotics are a vital class of drugs closely associated with the prevention and treatment of bacterial infections. Accurate prediction of molecular antimicrobial activity remains a key challenge in the pursuit of novel antibiotic…

Quantitative Methods · Quantitative Biology 2025-09-23 R. He

Antibiotic resistance poses a significant threat in in-patient settings with high mortality. Using MIMIC-III data, we generated Sentence-BERT embeddings from clinical notes and applied Neural Networks and XGBoost to predict antibiotic…

Computation and Language · Computer Science 2025-09-19 Mahmoud Alwakeel , Michael E. Yarrington , Rebekah H. Wrenn , Ethan Fang , Jian Pei , Anand Chowdhury , An-Kwok Ian Wong

An antibiogram is a periodic summary of antibiotic resistance results of organisms from infected patients to selected antimicrobial drugs. Antibiograms help clinicians to understand regional resistance rates and select appropriate…

Machine Learning · Computer Science 2023-05-04 Xingbo Fu , Chen Chen , Yushun Dong , Anil Vullikanti , Eili Klein , Gregory Madden , Jundong Li

Antimicrobial resistance to drugs (AMR), a global threat to human and animal health, is often regarded as resulting from cooperative behaviour. Moreover, microbes generally evolve in volatile environments that, together with demographic…

Populations and Evolution · Quantitative Biology 2024-06-18 Lluís Hernández-Navarro , Matthew Asker , Mauro Mobilia

Bacterial infections are responsible for high mortality worldwide. Antimicrobial resistance underlying the infection, and multifaceted patient's clinical status can hamper the correct choice of antibiotic treatment. Randomized clinical…

Machine Learning · Statistics 2022-07-18 Inyoung Jun , Simone Marini , Christina A. Boucher , J. Glenn Morris , Jiang Bian , Mattia Prosperi

Plasma is defined as the fourth state of matter and non-thermal plasma can be produced at atmospheric pressure under a high electrical field. The strong and broad-spectrum antimicrobial effect of plasma-activated liquids (PALs) is now well…

Machine Learning · Computer Science 2022-07-27 Mehmet Akif Ozdemir , Gizem Dilara Ozdemir , Merve Gul , Onan Guren , Utku Kursat Ercan

Hospital readmissions remain a challenge for healthcare systems, especially among patients with chronic conditions such as diabetes. Unplanned readmissions within 30 days are costly, strain hospital resources, and can indicate poor care…

Human-Computer Interaction · Computer Science 2026-03-24 Martin Sanchez , Nick Tran , Vuthea Chheang

The large reservoir of antibiotic resistant bacteria in raw and treated water supplies is a matter of public health concern. Currently, the National Antimicrobial Resistance Monitoring Systems, a collaborative effort of the Centers for…

Populations and Evolution · Quantitative Biology 2010-07-09 Bonita Lawrence , Anna Mummert , Charles Somerville

Background: Microbiota have evolved to acclimate themselves to many environments. Humanity is become ever increasingly medicated and many of those medications are antibiotics. Sadly, Microbiota are adapting to medication and with each…

Genomics · Quantitative Biology 2012-09-27 Casey Richardson