Related papers: Long paths make pattern-counting hard, and deep tr…
A Fixed-Parameter Tractable (\FPT) $\rho$-approximation algorithm for a minimization (resp. maximization) parameterized problem $P$ is an FPT algorithm that, given an instance $(x, k)\in P$ computes a solution of cost at most $k \cdot…
A sample of n generic points in the xy-plane defines a permutation that relates their ranks along the two axes. Every subset of k points similarly defines a pattern, which occurs in that permutation. The number of occurrences of small…
We connect the study of pseudodeterministic algorithms to two major open problems about the structural complexity of $\mathsf{BPTIME}$: proving hierarchy theorems and showing the existence of complete problems. Our main contributions can be…
The embedding problem is to decide, given an ordered pair of structures, whether or not there is an injective homomorphism from the first structure to the second. We study this problem using an established perspective in parameterized…
Computing a (short) path between two vertices is one of the most fundamental primitives in graph algorithmics. In recent years, the study of paths in temporal graphs, that is, graphs where the vertex set is fixed but the edge set changes…
Counting homomorphisms of a constant sized pattern graph $H$ in an input graph $G$ is a fundamental computational problem. There is a rich history of studying the complexity of this problem, under various constraints on the input $G$ and…
Text-to-pattern distance is a fundamental problem in string matching, where given a pattern of length $m$ and a text of length $n$, over an integer alphabet, we are asked to compute the distance between pattern and the text at every…
We consider Conditional Random Fields (CRFs) with pattern-based potentials defined on a chain. In this model the energy of a string (labeling) $x_1...x_n$ is the sum of terms over intervals $[i,j]$ where each term is non-zero only if the…
Cartesian tree matching is a form of generalized pattern matching where a substring of the text matches with the pattern if they share the same Cartesian tree. This form of matching finds application for time series of stock prices and can…
A pattern is encountered in a word if some infix of the word is the image of the pattern under some non-erasing morphism. A pattern $p$ is unavoidable if, over every finite alphabet, every sufficiently long word encounters $p$. A theorem by…
The perfect phylogeny mixture (PPM) model is useful due to its simplicity and applicability in scenarios where mutations can be assumed to accumulate monotonically over time. It is the underlying model in many tools that have been used, for…
We revisit the classical problem of computing the \emph{contour tree} of a scalar field $f:\mathbb{M} \to \mathbb{R}$, where $\mathbb{M}$ is a triangulated simplicial mesh in $\mathbb{R}^d$. The contour tree is a fundamental topological…
In this work, we develop the low-space Massively Parallel Computation (MPC) complexity landscape for a family of fundamental graph problems on trees. We present a general method that solves most locally checkable labeling (LCL) problems…
Patent classification into CPC codes underpins large scale analyses of technological change but remains challenging due to its hierarchical, multi label, and highly imbalanced structure. While pre Generative AI supervised encoder based…
Many hard graph problems, such as Hamiltonian Cycle, become FPT when parameterized by treewidth, a parameter that is bounded only on sparse graphs. When parameterized by the more general parameter clique-width, Hamiltonian Cycle becomes…
Regular tree grammars and regular path expressions constitute core constructs widely used in programming languages and type systems. Nevertheless, there has been little research so far on reasoning frameworks for path expressions where node…
We discuss the complexity of path enumeration and counting in weighted temporal graphs. In a weighted temporal graph, each edge has an availability time, a traversal time and some real cost. We introduce two bicriteria temporal min-cost…
Forbidden Patterns Problems (FPPs) are a proper generalisation of Constraint Satisfaction Problems (CSPs). However, we show that when the input is connected and belongs to a class which has low tree-depth decomposition (e.g. structure of…
We study the design of fixed-parameter algorithms for problems already known to be solvable in polynomial time. The main motivation is to get more efficient algorithms for problems with unattractive polynomial running times. Here, we focus…
We study the problems of counting the homomorphisms, counting the copies, and counting the induced copies of a $k$-vertex graph $H$ in a $d$-degenerate $n$-vertex graph $G$. Our main result establishes exhaustive and explicit complexity…