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A pangenome captures the genetic diversity across multiple individuals simultaneously, providing a more comprehensive reference for genome analysis than a single linear genome, which may introduce allele bias. A widely adopted pangenome…

Data Structures and Algorithms · Computer Science 2026-02-16 Xingfu Li , Yongping Wang

In this paper, we prove a tight minimum degree condition in general graphs for the existence of paths between two given endpoints, whose lengths form a long arithmetic progression with common difference one or two. This allows us to obtain…

Combinatorics · Mathematics 2021-01-27 Jun Gao , Qingyi Huo , Chun-Hung Liu , Jie Ma

Motivated by the classical conjectures of Lov\'asz, Thomassen, and Smith, recent work has renewed interest in the study of longest cycles in important graph families, such as vertex-transitive and highly connected graphs. In particular,…

Combinatorics · Mathematics 2025-08-26 Jie Ma , Ziyuan Zhao

In the Exact Matching Problem (EM), we are given a graph equipped with a fixed coloring of its edges with two colors (red and blue), as well as a positive integer $k$. The task is then to decide whether the given graph contains a perfect…

Data Structures and Algorithms · Computer Science 2022-07-14 Nicolas El Maalouly , Raphael Steiner

Given a graph $G$, the maximal induced subgraphs problem asks to enumerate all maximal induced subgraphs of $G$ that belong to a certain hereditary graph class. While its optimization version, known as the minimum vertex deletion problem in…

Data Structures and Algorithms · Computer Science 2020-04-22 Yixin Cao

The notion of treewidth, introduced by Robertson and Seymour in their seminal Graph Minors series, turned out to have tremendous impact on graph algorithmics. Many hard computational problems on graphs turn out to be efficiently solvable in…

Data Structures and Algorithms · Computer Science 2019-09-24 Michał Ziobro , Marcin Pilipczuk

We present practical linear and almost linear-time algorithms to compute a chain decomposition of a directed acyclic graph (DAG), $G=(V,E)$. The number of vertex-disjoint chains computed is very close to the minimum. The time complexity of…

Data Structures and Algorithms · Computer Science 2022-12-09 Giorgos Kritikakis , Ioannis G. Tollis

A simple-triangle graph (also known as a PI graph) is the intersection graph of a family of triangles defined by a point on a horizontal line and an interval on another horizontal line. The recognition problem for simple-triangle graphs was…

Discrete Mathematics · Computer Science 2017-04-04 Asahi Takaoka

A signed tree model of a graph $G$ is a compact binary structure consisting of a rooted binary tree whose leaves are bijectively mapped to the vertices of $G$, together with 2-colored edges $xy$, called transversal pairs, interpreted as…

Data Structures and Algorithms · Computer Science 2026-02-19 Édouard Bonnet , Colin Geniet , Eun Jung Kim , Sungmin Moon

We study the design of robust subexponential algorithms for classical connectivity problems on intersection graphs of similarly sized fat objects in $\mathbb{R}^d$. In this setting, each vertex corresponds to a geometric object, and two…

Data Structures and Algorithms · Computer Science 2025-12-04 Malory Marin , Jean-Florent Raymond , Rémi Watrigant

In this paper we give fast distributed graph algorithms for detecting and listing small subgraphs, and for computing or approximating the girth. Our algorithms improve upon the state of the art by polynomial factors, and for girth, we…

Data Structures and Algorithms · Computer Science 2021-01-20 Keren Censor-Hillel , Orr Fischer , Tzlil Gonen , François Le Gall , Dean Leitersdorf , Rotem Oshman

The locality of a graph problem is the smallest distance $T$ such that each node can choose its own part of the solution based on its radius-$T$ neighborhood. In many settings, a graph problem can be solved efficiently with a distributed or…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-12-14 Yi-Jun Chang , Jan Studený , Jukka Suomela

Cycles in graphs often signify interesting processes. For example, cyclic trading patterns can indicate inefficiencies or economic dependencies in trade networks, cycles in food webs can identify fragile dependencies in ecosystems, and…

Data Structures and Algorithms · Computer Science 2019-09-04 Florian Adriaens , Cigdem Aslay , Tijl De Bie , Aristides Gionis , Jefrey Lijffijt

We examine the possibility of approximating Maximum Vertex-Disjoint Shortest Paths. In this problem, the input is an edge-weighted (directed or undirected) $n$-vertex graph $G$ along with $k$ terminal pairs…

Data Structures and Algorithms · Computer Science 2025-04-23 Matthias Bentert , Fedor V. Fomin , Petr A. Golovach

We consider the problem of approximate counting of triangles and longer fixed length cycles in directed graphs. For triangles, T\v{e}tek [ICALP'22] gave an algorithm that returns a $(1 \pm \eps)$-approximation in…

Data Structures and Algorithms · Computer Science 2024-10-01 Keren Censor-Hillel , Tomer Even , Virginia Vassilevska Williams

We present improved algorithms for short cycle decomposition of a graph. Short cycle decompositions were introduced in the recent work of Chu et al, and were used to make progress on several questions in graph sparsification. For all…

Data Structures and Algorithms · Computer Science 2019-01-15 Yang P. Liu , Sushant Sachdeva , Zejun Yu

In algorithmic graph theory, a classic open question is to determine the complexity of the Maximum Independent Set problem on $P_t$-free graphs, that is, on graphs not containing any induced path on $t$ vertices. So far, polynomial-time…

Data Structures and Algorithms · Computer Science 2018-04-12 Gábor Bacsó , Daniel Lokshtanov , Dániel Marx , Marcin Pilipczuk , Zsolt Tuza , Erik Jan van Leeuwen

Exact pattern matching in labeled graphs is the problem of searching paths of a graph $G=(V,E)$ that spell the same string as the pattern $P[1..m]$. This basic problem can be found at the heart of more complex operations on variation graphs…

Computational Complexity · Computer Science 2020-06-04 Massimo Equi , Roberto Grossi , Veli Mäkinen

The parametric shortest path problem is to find the shortest paths in graph where the edge costs are of the form w_ij+lambda where each w_ij is constant and lambda is a parameter that varies. The problem is to find shortest path trees for…

Data Structures and Algorithms · Computer Science 2015-06-02 Neal Young , Robert Tarjan , James Orlin

Computing shortest paths is one of the central problems in the theory of distributed computing. For the last few years, substantial progress has been made on the approximate single source shortest paths problem, culminating in an algorithm…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-04-13 Mohsen Ghaffari , Jason Li