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We argue for a convergence of crystallography, materials science and biology, that will come about through asking materials questions about biology and biological questions about materials, illuminated by considerations of information. The…

Adaptation and Self-Organizing Systems · Physics 2012-07-18 Julyan H. E. Cartwright , Alan L. Mackay

Machine Learning (ML) systems are capable of reproducing and often amplifying undesired biases. This puts emphasis on the importance of operating under practices that enable the study and understanding of the intrinsic characteristics of ML…

Artificial Intelligence · Computer Science 2025-12-01 Mayra Russo , Maria-Esther Vidal

A fundamental objective of materials modeling is identifying atomic structures that align with experimental observables. Conventional approaches for disordered materials involve sampling from thermodynamic ensembles and hoping for an…

Materials Science · Physics 2025-09-30 Tigany Zarrouk , Miguel A. Caro

Natural language is expected to be a key medium for various human-machine interactions in the era of large language models. When it comes to the biochemistry field, a series of tasks around molecules (e.g., property prediction, molecule…

Computation and Language · Computer Science 2023-06-22 Zheni Zeng , Bangchen Yin , Shipeng Wang , Jiarui Liu , Cheng Yang , Haishen Yao , Xingzhi Sun , Maosong Sun , Guotong Xie , Zhiyuan Liu

Automation is one of the cornerstones of contemporary material discovery. Bayesian optimization (BO) is an essential part of such workflows, enabling scientists to leverage prior domain knowledge into efficient exploration of a large…

Machine Learning · Computer Science 2024-05-30 Agustinus Kristiadi , Felix Strieth-Kalthoff , Marta Skreta , Pascal Poupart , Alán Aspuru-Guzik , Geoff Pleiss

The development of complex functional materials poses a multi-objective optimization problem in a large multidimensional parameter space. Solving it requires reproducible, user independent laboratory work and intelligent preselection of…

The development of science-based categorization strategies for regulatory purposes is not a simple task. It requires understanding the needs and capacity of a wide variety of stakeholders and should consider the potential risks and…

Materials Science · Physics 2021-01-12 Scott C. Brown

Metal-organic frameworks (MOFs) are a class of crystalline materials with promising applications in many areas such as carbon capture and drug delivery. In this work, we introduce MOFFlow, the first deep generative model tailored for MOF…

Biomolecules · Quantitative Biology 2025-03-20 Nayoung Kim , Seongsu Kim , Minsu Kim , Jinkyoo Park , Sungsoo Ahn

In collaborative agile ontology development projects support for modular reuse of ontologies from large existing remote repositories, ontology project life cycle management, and transitive dependency management are important needs. The…

Software Engineering · Computer Science 2013-09-30 Adrian Paschke

Developing and organizing new knowledge is a core activity for scholars. Recently, ontologies have been introduced as an approach for organizing knowledge. However, most ontologies do not readily support the development and organization of…

Digital Libraries · Computer Science 2017-01-03 Robert B. Allen

The development of tailored materials for specific applications is an active field of research in chemistry, material science and drug discovery. The number of possible molecules that can be obtained from a set of atomic species grow…

This paper presents an ontology of portions of matter with practical implications across scientific and industrial domains. The ontology is developed under the Unified Foundational Ontology (UFO), which uses the concept of quantity to…

Artificial Intelligence · Computer Science 2024-06-04 Lucas Valadares Vieira , Mara Abel , Fabricio Henrique Rodrigues , Tiago Prince Sales , Claudenir M. Fonseca

To provide a foundation for conceptual modeling, ontologies have been introduced to specify the entities, the existences of which are acknowledged in the model. Ontologies are essential components as mechanisms to model a portion of reality…

Artificial Intelligence · Computer Science 2020-07-21 Sabah Al-Fedaghi

The rapid discovery of new chemical compounds is essential for advancing global health and developing treatments. While generative models show promise in creating novel molecules, challenges remain in ensuring the real-world applicability…

Biomolecules · Quantitative Biology 2025-09-29 Onur Boyar , Hiroyuki Hanada , Ichiro Takeuchi

Recent advances in atomic and nano-scale growth and characterization techniques have led to the production of modern magnetic materials and magneto-devices which reveal a range of new fascinating phenomena. The modeling of these is a tough…

Mesoscale and Nanoscale Physics · Physics 2009-09-29 S. Sanvito

Materials discovery is fundamental to advance next-generation technologies as well as for sustainable and circular economy. Beyond computational screening, generative models are efficient at finding materials with desired properties, via…

Inspired by Nature, molecular communications (MC), i.e., use of molecules to encode, transmit and receive information, stands as the most promising communication paradigm to realize nanonetworks. Even though there has been extensive…

Emerging Technologies · Computer Science 2019-06-04 Murat Kuscu , Ergin Dinc , Bilgesu A. Bilgin , Hamideh Ramezani , Ozgur B. Akan

Metamaterials are artificial materials designed to exhibit effective material parameters that go beyond those found in nature. Composed of unit cells with rich designability that are assembled into multiscale systems, they hold great…

Computational Engineering, Finance, and Science · Computer Science 2023-12-07 Doksoo Lee , Wei Wayne Chen , Liwei Wang , Yu-Chin Chan , Wei Chen

Ontology Matching (OM), is a critical task in knowledge integration, where aligning heterogeneous ontologies facilitates data interoperability and knowledge sharing. Traditional OM systems often rely on expert knowledge or predictive…

Artificial Intelligence · Computer Science 2024-04-24 Hamed Babaei Giglou , Jennifer D'Souza , Felix Engel , Sören Auer

We introduce a new direction in the field of atom optics, atom interferometry, and neutral-atom quantum information processing. It is based on the use of microfabricated optical elements. With these elements versatile and integrated atom…

Quantum Physics · Physics 2009-11-06 G. Birkl , F. B. J. Buchkremer , R. Dumke , W. Ertmer
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