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Urine sediment examination (USE) is one of the main tests used in the evaluation of diseases such as kidney, urinary, metabolic, and diabetes and to determine the density and number of various cells in the urine. USE's manual microscopy is…

Quantitative Methods · Quantitative Biology 2023-02-23 Taner Tuncer , Merve Erkuş , Ahmet Çınar , Hakan Ayyıldız , Seda Arslan Tuncer

In the present work, we developed a sustainable and effective antimicrobial surface film based on Micro-Fibrillated Cellulose. The resulting porous cellulose thin film is barely noticeable to human eyes due to its sub-micron thickness, of…

The transmission of viruses/ bacteria cause infection predominantly via aerosols. The transmission mechanism of respiratory diseases is complex, including direct or indirect contact, large droplet, and airborne routes apart from close…

The body is home to a diverse microbiota, mainly in the gut. Resistant bacteria are selected for by antibiotic treatments, and once resistance becomes widespread in a population of hosts, antibiotics become useless. Here, we develop a…

Populations and Evolution · Quantitative Biology 2020-03-25 Florence Bansept , Loïc Marrec , Anne-Florence Bitbol , Claude Loverdo

Evidence of chemical disequilibria and other anomalous observations in the Venusian atmosphere motivate the search for life within the planet's temperate clouds. To find signs of a Venusian aerial biosphere, a dedicated astrobiological…

Instrumentation and Methods for Astrophysics · Physics 2022-11-10 Robert E. Weber , Janusz J. Petkowski , Monika U. Weber

There is an urgent need for the development of novel and truly rapid (equal or less than 1 hour) antibiotic susceptibility testing (AST) platforms in order to provide best antimicrobial prescribing practices and to help reduce the…

Subcellular Processes · Quantitative Biology 2025-01-22 Allen Fraiman , Lawrence Ziegler

A rapid, cost-effective and easy method that allows on-site determination of the concentration of live and dead bacterial cells using a fibre-based spectroscopic device (the optrode system) is proposed and demonstrated. Identification of…

Quantitative Methods · Quantitative Biology 2018-09-12 Fang Ou , Cushla McGoverin , Simon Swift , Frédérique Vanholsbeeck

The induced diffusion of tracers in a bacterial suspension is studied theoretically and experimentally at low bacterial concentrations. Considering the swimmer-tracer hydrodynamic interactions at low-Reynolds number and using a kinetic…

Soft Condensed Matter · Physics 2015-06-11 G. L. Miño , J. Dunstan , A. Rousselet , E. Clement , R. Soto

Bacterial sensor systems can be used for the detection and measurement of molecular signal concentrations. The dynamics of the sensor directly depend on the biological properties of the bacterial sensor cells; manipulation of these features…

Molecular Networks · Quantitative Biology 2024-06-26 Florian Anderl , Gabriela Salvadori , Mladen Veletic , Fernanda Cristina Petersen , Ilangko Balasingham

Metagenomics sequencing is routinely applied to quantify bacterial abundances in microbiome studies, where the bacterial composition is estimated based on the sequencing read counts. Due to limited sequencing depth and DNA dropouts, many…

Methodology · Statistics 2019-04-26 Yuanpei Cao , Anru Zhang , Hongzhe Li

For many applications, it is important to catch collections of autonomously navigating microbes and man-made microswimmers in a controlled way. Here we propose an efficient trap to collectively capture self-propelled colloidal rods. By…

Soft Condensed Matter · Physics 2012-07-13 A. Kaiser , H. H. Wensink , H. Löwen

Biofilms are bacterial aggregates encased in a self-produced polymeric matrix which attach to moist surfaces and are extremely resistant to chemicals and antibiotics. Recent experiments show that their structure is defined by the interplay…

Soft Condensed Matter · Physics 2024-01-17 Ana Carpio , Elena Cebrian , Perfecto Vidal

An explicit proposal for experiments leading to abrupt transitions in spatially extended bacterial populations in a Petri dish is presented on the basis of an exact formula obtained through an analytic theory. The theory provides accurately…

Adaptation and Self-Organizing Systems · Physics 2009-11-13 V. M. Kenkre , Niraj Kumar

Hospital acquired infections are a serious threat to the health and well-being of patients and medical staff within clinical units. Many of these infections arise as a consequence of medical personnel that come into contact with…

Airborne contaminants, e.g., bacterial spores, are usually analyzed by time consuming microscopic, chemical and biological assays. Current research into real time laser spectroscopic detectors of such contaminants is based on e.g. resonant…

Fecal-contaminated water causes diseases and even death. Current microbial water safety tests require pathogen incubation, taking 24-72 hours and costing \$20-\$50 per test. This paper presents a solution (DeepScope) exceeding UNICEF's…

Other Computer Science · Computer Science 2026-03-10 Sanjay Srinivasan

A major public health issue is the growing resistance of bacteria to antibiotics. An important part of the needed response is the discovery and development of new antimicrobial strategies. These require the screening of potential new drugs,…

Applications · Statistics 2026-02-19 Byran Smucker , Benjamin Brennan , Emily Rego , Meng Wu , Zhihong Lin , Brian Ahmer , Blake Peterson

Bacterial attachment and biofilm formation on implant surface has been a major concern in hospital and industrial environment. Prevention of bacterial infections of implant surface through surface treatment could be a potential solution and…

Many biological examples of fluid-structure interaction, including the transit of red blood cells through the narrow slits in the spleen and the intracellular trafficking of vesicles into dendritic spines, involve the near-contact of…

Numerical Analysis · Mathematics 2017-12-20 Thomas G. Fai , Chris H. Rycroft

Biosensors are an essential tool for medical diagnostics, environmental monitoring and food safety. Typically, biosensors are designed to detect specific analytes through functionalization with the appropriate capture agents. However, the…

Medical Physics · Physics 2023-09-26 Simon J. Ward , Tengfei Cao , Xiang Zhou , Catie Chang , Sharon M. Weiss