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This paper proposes a novel topological learning framework that integrates networks of different sizes and topology through persistent homology. Such challenging task is made possible through the introduction of a computationally efficient…

Neurons and Cognition · Quantitative Biology 2023-01-30 Tananun Songdechakraiwut , Moo K. Chung

Persistent homology has been applied to brain network analysis for finding the shape of brain networks across multiple thresholds. In the persistent homology, the shape of networks is often quantified by the sequence of $k$-dimensional…

Quantitative Methods · Quantitative Biology 2018-11-13 Hyekyoung Lee , Moo K. Chung , Hongyoon Choi , Hyejin Kang , Seunggyun Ha , Yu Kyeong Kim , Dong Soo Lee

Understanding the common topological characteristics of the human brain network across a population is central to understanding brain functions. The abstraction of human connectome as a graph has been pivotal in gaining insights on the…

Quantitative Methods · Quantitative Biology 2023-04-26 Soumya Das , D. Vijay Anand , Moo K. Chung

Learning or memory formation are associated with the strengthening of the synaptic connections between neurons according to a pattern reflected by the input. According to this theory a retained memory sequence is associated to a dynamic…

Dynamical Systems · Mathematics 2016-03-23 Pascal Chossat , Martin Krupa

Brain connectomics is still largely dominated by pairwise-based models, such as graphs, which cannot represent circulatory or higher-order functional interactions. In this paper, we propose a multimodal framework based on Topological Signal…

Neurons and Cognition · Quantitative Biology 2026-04-01 Breno C. Bispo , Stefania Sardellitti , Juliano B. Lima , Fernando A. N. Santos

Deep learning models have achieved remarkable success across various domains, yet their learned representations and decision-making processes remain largely opaque and hard to interpret. This work introduces HOLE (Homological Observation of…

Machine Learning · Computer Science 2026-04-08 Sudhanva Manjunath Athreya , Paul Rosen

While topological data analysis has emerged as a powerful paradigm for structural inference, its foundational tools, notably persistent homology and the persistent Laplacian, are frequently insensitive to localized structural fluctuations…

Algebraic Topology · Mathematics 2026-03-10 Jian Liu , Hongsong Feng , Kefeng Liu

Topological techniques have become a popular tool for studying information flows in neural networks. In particular, simplicial homology theory is used to analyze how cognitive representations of space emerge from large conglomerates of…

Neurons and Cognition · Quantitative Biology 2025-02-19 Andrey Babichev , Vladimir Vashin , Yuri Dabaghian

Complex systems in the real world can be modeled as a network of connected components. The human brain, as a network of neurons among which the interactions cause perception, is a complex network. Synchronization is a dynamical phenomenon…

Biological Physics · Physics 2019-04-30 Arefeh Mazarei , Mohammad Amirian Matlob , Gholamhossein Riazi , Yousef Jamali

Probabilistic inference offers a principled framework for understanding both behaviour and cortical computation. However, two basic and ubiquitous properties of cortical responses seem difficult to reconcile with probabilistic inference:…

Neurons and Cognition · Quantitative Biology 2017-01-03 Laurence Aitchison , Máté Lengyel

Investigation of human brain states through electroencephalograph (EEG) signals is a crucial step in human-machine communications. However, classifying and analyzing EEG signals are challenging due to their noisy, nonlinear and…

Machine Learning · Statistics 2019-12-19 Farzana Nasrin , Christopher Oballe , David L. Boothe , Vasileios Maroulas

Despite growing interest in synchronization dynamics over "higher-order" network models, optimization theory for such systems is limited. Here, we study a family of Kuramoto models inspired by algebraic topology in which oscillators are…

Adaptation and Self-Organizing Systems · Physics 2026-01-12 Cameron Purple , Per Sebastian Skardal , Dane Taylor

Modeling of conservative systems with neural networks is an area of active research. A popular approach is to use Hamiltonian neural networks (HNNs) which rely on the assumptions that a conservative system is described with Hamilton's…

Artificial Intelligence · Computer Science 2024-07-18 Katsiaryna Haitsiukevich , Alexander Ilin

Neural manifolds summarize the intrinsic structure of the information encoded by a population of neurons. Advances in experimental techniques have made simultaneous recordings from multiple brain regions increasingly commonplace, raising…

Neurons and Cognition · Quantitative Biology 2025-03-27 Iris H. R. Yoon , Gregory Henselman-Petrusek , Yiyi Yu , Robert Ghrist , Spencer LaVere Smith , Chad Giusti

Higher-order interaction networks are typically modeled using hypergraphs or simplicial complexes, where interactions explicitly involve more than two nodes. Here we demonstrate that effective higher-order dynamical constraints emerge…

Physics and Society · Physics 2026-04-22 Lluís Torres-Hugas , Jordi Duch , Sergio Gómez , Alex Arenas

Traditionally, interaction systems have been described as networks, where links encode information on the pairwise influences among the nodes. Yet, in many systems, interactions take place in larger groups. Recent work has shown that…

Adaptation and Self-Organizing Systems · Physics 2020-09-30 Maxime Lucas , Giulia Cencetti , Federico Battiston

Within the context of topological data analysis, the problems of identifying topological significance and matching signals across datasets are important and useful inferential tasks in many applications. The limitation of existing solutions…

Algebraic Topology · Mathematics 2024-06-26 Inés García-Redondo , Anthea Monod , Anna Song

Traditional graph signal processing (GSP) methods applied to brain networks focus on signals defined on the nodes. Thus, they are unable to capture potentially important dynamics occurring on the edges. In this work, we adopt an…

Signal Processing · Electrical Eng. & Systems 2025-12-16 Andrea Santoro , Marco Nurisso , Giovanni Petri

Hodge Laplacians have been previously proposed as a natural tool for understanding higher-order interactions in networks and directed graphs. Here we introduce a Hodge-theoretic approach to spectral theory and dimensionality reduction for…

Algebraic Topology · Mathematics 2023-10-18 Hannah Santa Cruz Baur , Vladimir Itskov

Persistent homology (PH) characterizes the shape of brain networks through persistence features. Group comparison of persistence features from brain networks can be challenging as they are inherently heterogeneous. A recent scale-space…

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