Related papers: BioIE: Biomedical Information Extraction with Mult…
Automating the Key Information Extraction (KIE) from documents improves efficiency, productivity, and security in many industrial scenarios such as rapid indexing and archiving. Many existing supervised learning methods for the KIE task…
Scientific information extraction (SciIE) has primarily relied on entity-relation extraction in narrow domains, limiting its applicability to interdisciplinary research and struggling to capture the necessary context of scientific…
Increasingly large electronic health records (EHRs) provide an opportunity to algorithmically learn medical knowledge. In one prominent example, a causal health knowledge graph could learn relationships between diseases and symptoms and…
We present an architecture for information extraction from text that augments an existing parser with a character-level neural network. The network is trained using a measure of consistency of extracted data with existing databases as a…
Many models are proposed in the literature on biomedical event extraction(BEE). Some of them use the shortest dependency path(SDP) information to represent the argument classification task. There is an issue with this representation since…
Abstracts derived from biomedical literature possess distinct domain-specific characteristics, including specialised writing styles and biomedical terminologies, which necessitate a deep understanding of the related literature. As a result,…
Information extraction (IE) is an important task in Natural Language Processing (NLP), involving the extraction of named entities and their relationships from unstructured text. In this paper, we propose a novel approach to this task by…
Medical deep learning models depend heavily on domain-specific knowledge to perform well on knowledge-intensive clinical tasks. Prior work has primarily leveraged unimodal knowledge graphs, such as the Unified Medical Language System…
Joint entity and relation extraction is the fundamental task of information extraction, consisting of two subtasks: named entity recognition and relation extraction. However, most existing joint extraction methods suffer from issues of…
PURPOSE: We propose a fully unsupervised method to learn latent disease networks directly from unstructured biomedical text corpora. This method addresses current challenges in unsupervised knowledge extraction, such as the detection of…
Open Information Extraction (OpenIE) aims to extract relational tuples from open-domain sentences. Traditional rule-based or statistical models have been developed based on syntactic structures of sentences, identified by syntactic parsers.…
Knowledge Graphs have been one of the fundamental methods for integrating heterogeneous data sources. Integrating heterogeneous data sources is crucial, especially in the biomedical domain, where central data-driven tasks such as drug…
Deep learning has brought significant progress to medical image classification, yet most existing methods still rely on isolated visual evidence and cannot effectively leverage similar cases or external knowledge. In clinical practice,…
Investigative Journalism (IJ, in short) is staple of modern, democratic societies. IJ often necessitates working with large, dynamic sets of heterogeneous, schema-less data sources, which can be structured, semi-structured, or textual,…
Information extraction (IE) aims to extract structural knowledge from plain natural language texts. Recently, generative Large Language Models (LLMs) have demonstrated remarkable capabilities in text understanding and generation. As a…
Document-level relation extraction (DocRE) is a task that focuses on identifying relations between entities within a document. However, existing DocRE models often overlook the correlation between relations and lack a quantitative analysis…
This paper addresses the challenges posed by the unstructured nature and high-dimensional semantic complexity of electronic health record texts. A deep learning method based on attention mechanisms is proposed to achieve unified modeling…
We consider a joint information extraction (IE) model, solving named entity recognition, coreference resolution and relation extraction jointly over the whole document. In particular, we study how to inject information from a knowledge base…
Information extraction (IE) from unstructured documents remains a critical challenge in data processing pipelines. Traditional optical character recognition (OCR) methods and conventional parsing engines demonstrate limited effectiveness…
In recent years, Graph Neural Networks (GNNs) have been popular in graph representation learning which assumes the homophily property, i.e., the connected nodes have the same label or have similar features. However, they may fail to…