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We consider molecule generation in 3D space using language models (LMs), which requires discrete tokenization of 3D molecular geometries. Although tokenization of molecular graphs exists, that for 3D geometries is largely unexplored. Here,…

Artificial Intelligence · Computer Science 2024-08-20 Xiner Li , Limei Wang , Youzhi Luo , Carl Edwards , Shurui Gui , Yuchao Lin , Heng Ji , Shuiwang Ji

The problem of implementing a class of functions with particular conditions by using monotonic multilayer functions is considered. A genetic algorithm is used to create monotonic functions of a certain class, and these are implemented with…

Neural and Evolutionary Computing · Computer Science 2012-11-06 Yukihiro Kamada , Kiyonori Miyasaki

We examine the use of domain decomposition for potentially more efficient mean curvature flow of surface meshes, whose faces are arbitrary simple polygons. We first test traditional domain decomposition methods with and without overlap of…

Numerical Analysis · Mathematics 2026-05-13 Lenka Ptackova , Michal Outrata

The synthesis of a metasurface exhibiting a specific set of desired scattering properties is a time-consuming and resource-demanding process, which conventionally relies on many cycles of full-wave simulations. It requires an experienced…

Signal Processing · Electrical Eng. & Systems 2021-09-15 Parinaz Naseri , Sean V. Hum

Pixel2Mesh (P2M) is a classical approach for reconstructing 3D shapes from a single color image through coarse-to-fine mesh deformation. Although P2M is capable of generating plausible global shapes, its Graph Convolution Network (GCN)…

Computer Vision and Pattern Recognition · Computer Science 2024-03-21 Shijie Zhang , Boyan Jiang , Keke He , Junwei Zhu , Ying Tai , Chengjie Wang , Yinda Zhang , Yanwei Fu

We describe a novel, interdisciplinary, computational methods course that uses Python and associated numerical and visualization libraries to enable students to implement simulations for a number of different course modules. Problems in…

Chaotic Dynamics · Physics 2007-05-23 Christopher R. Myers , James. P. Sethna

This work presents a new framework for procedural generation of dynamic 3D plant model geometries, which has been implemented in the Helios modeling system. Key goals of this work were to develop a model that 1) has a generalized set of…

Other Quantitative Biology · Quantitative Biology 2025-12-23 Brian N. Bailey

By analogy to the three dimensional optical bottle beam, we introduce the plasmonic bottle beam: a two dimensional surface wave which features a lattice of plasmonic bottles, i.e. alternating regions of bright focii surrounded by low…

Modern image generative models show remarkable sample quality when trained on a single domain or class of objects. In this work, we introduce a generative adversarial network that can simultaneously generate aligned image samples from…

Computer Vision and Pattern Recognition · Computer Science 2022-06-08 Seung Wook Kim , Karsten Kreis , Daiqing Li , Antonio Torralba , Sanja Fidler

Sketching is an important activity in any design process. Designers and stakeholders share their ideas through hand-drawn sketches. These sketches are further used to create 3D models. Current methods to generate 3D models from sketches are…

Computer Vision and Pattern Recognition · Computer Science 2022-04-12 Nitish Bhardwaj , Dhornala Bharadwaj , Alpana Dubey

Partial differential equations can be solved on general polygonal and polyhedral meshes, through Polytopal Element Methods (PEMs). Unfortunately, the relation between geometry and analysis is still unknown and subject to ongoing research in…

Computational Geometry · Computer Science 2022-11-23 Daniela Cabiddu , Giuseppe Patanè , Michela Spagnuolo

In this paper we present a framework for solving two phase flow problems in porous media. The discretization is based on a Discontinuous Galerkin method and includes local grid adaptivity and local choice of polynomial degree. The method is…

Computational Engineering, Finance, and Science · Computer Science 2018-05-02 Andreas Dedner , Birane Kane , Robert Klöfkorn , Martin Nolte

We propose a new two-dimensional meshing algorithm called PINW able to generate meshes that accurately approximate the distance between any two domain points by paths composed only of cell edges. This technique is based on an extension of…

Computational Geometry · Computer Science 2025-10-20 Pritam Ganguly , Stephen A. Vavasis , Katerina D. Papoulia

We present a geometric multigrid solver based on adaptive smoothed aggregation suitable for Discontinuous Galerkin (DG) discretisations. Mesh hierarchies are formed via domain decomposition techniques, and the method is applicable to fully…

Numerical Analysis · Mathematics 2025-06-02 Yulong Pan , Michael Lindsey , Per-Olof Persson

Recent conditional image generation methods produce images of remarkable diversity, fidelity and realism. However, the majority of these methods allow conditioning only on labels or text prompts, which limits their level of control over the…

Computer Vision and Pattern Recognition · Computer Science 2023-02-14 Dina Bashkirova , Jose Lezama , Kihyuk Sohn , Kate Saenko , Irfan Essa

We describe a flexible, script-based system for the procedural generation and animation of 3D geometry. Dynamic triangular meshes are generated through the real-time execution of scripts written in the Lua programming language. Tight…

Graphics · Computer Science 2020-04-23 Jon McCormack , Ben Porter , James Wetter

Models can be built directly from input and output data trough a process known as system identification. The Nonlinear AutoRegressive with eXogenous inputs (NARMAX) models are among the most used mathematical representations in the area and…

Systems and Control · Electrical Eng. & Systems 2022-11-11 Henrique Carvalho de Castro , Bruno Henrique Groenner Barbosa

We consider the problem of parsing natural language descriptions into source code written in a general-purpose programming language like Python. Existing data-driven methods treat this problem as a language generation task without…

Computation and Language · Computer Science 2017-04-07 Pengcheng Yin , Graham Neubig

For domains that are easily represented by structured meshes, robust geometric multigrid solvers can quickly provide the numerical solution to many discretized elliptic PDEs. However, for complicated domains with unstructured meshes,…

Numerical Analysis · Mathematics 2025-09-11 Nicolas Nytko , Scott MacLachlan , J. David Moulton , Luke N. Olson , Andrew Reisner , Matthew West

We propose an end-to-end deep learning architecture that produces a 3D shape in triangular mesh from a single color image. Limited by the nature of deep neural network, previous methods usually represent a 3D shape in volume or point cloud,…

Computer Vision and Pattern Recognition · Computer Science 2018-08-06 Nanyang Wang , Yinda Zhang , Zhuwen Li , Yanwei Fu , Wei Liu , Yu-Gang Jiang
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