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This paper summarizes the development of Veamy, an object-oriented C++ library for the virtual element method (VEM) on general polygonal meshes, whose modular design is focused on its extensibility. The linear elastostatic and Poisson…

We analyse the axioms of Euclidean geometry according to standard object-oriented software development methodology. We find a perfect match: the main undefined concepts of the axioms translate to object classes. The result is a suite of C++…

Computational Geometry · Computer Science 2009-09-29 M. H. van Emden , B. Moa

Searching for geometric objects that are close in space is a fundamental component of many applications. The performance of search algorithms comes to the forefront as the size of a problem increases both in terms of total object count as…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-06-30 D. Lebrun-Grandié , A. Prokopenko , B. Turcksin , S. R. Slattery

Library migration is a challenging problem, where most existing approaches rely on prior knowledge. This can be, for example, information derived from changelogs or statistical models of API usage. This paper addresses a different API…

Software Engineering · Computer Science 2020-08-28 Bruce Collie , Philip Ginsbach , Jackson Woodruff , Ajitha Rajan , Michael O'Boyle

We present mechanoChemML, a machine learning software library for computational materials physics. mechanoChemML is designed to function as an interface between platforms that are widely used for machine learning on one hand, and others for…

Computational Engineering, Finance, and Science · Computer Science 2022-05-03 X. Zhang , G. H. Teichert , Z. Wang , M. Duschenes , S. Srivastava , E. Livingston , J. Holber , M. Faghih Shojaei , A. Sundararajan , K. Garikipati

Constrained Motion Planning (CMP) aims to find a collision-free path between the given start and goal configurations on the kinematic constraint manifolds. These problems appear in various scenarios ranging from object manipulation to…

Robotics · Computer Science 2024-03-12 Ruiqi Ni , Ahmed H. Qureshi

I present libcommute, a C++11/14/17 template library that implements a domain-specific language for easy manipulating of polynomial operators used in the quantum many-body theory, as well as a software development toolkit for exact…

Computational Physics · Physics 2021-12-17 Igor Krivenko

We have developed a new programming framework, called Sieve, to support parallel numerical PDE algorithms operating over distributed meshes. We have also developed a reference implementation of Sieve in C++ as a library of generic…

Computational Engineering, Finance, and Science · Computer Science 2010-09-02 Matthew G. Knepley , Dmitry A. Karpeev

Kinematics is a core topic in early physics courses, yet students often struggle to interpret motion and its graphical representations. To tackle these difficulties, we developed MissionMotion, a physical-computational videogame where…

We present an open-source simulation framework for optically detected magnetic resonance, developed in Python. The framework allows users to construct, manipulate, and evolve multipartite quantum systems that consist of spins and electronic…

Quantum Physics · Physics 2025-01-13 Laura A. Völker , John M. Abendroth , Christian L. Degen , Konstantin Herb

With the spread of robots in unstructured, dynamic environments, the topic of path replanning has gained importance in the robotics community. Although the number of replanning strategies has significantly increased, there is a lack of…

Robotics · Computer Science 2023-12-01 Cesare Tonola , Manuel Beschi , Marco Faroni , Nicola Pedrocchi

The Muon Ionization Cooling Experiment (MICE) collaboration has developed the MICE Analysis User Software (MAUS) to simulate and analyze experimental data. It serves as the primary codebase for the experiment, providing for offline batch…

MIML library is a Java software tool to develop, test, and compare classification algorithms for multi-instance multi-label (MIML) learning. The library includes 43 algorithms and provides a specific format and facilities for data managing…

Machine Learning · Computer Science 2024-02-14 Álvaro Belmonte , Amelia Zafra , Eva Gibaja

We are designing and developing a web user interface for digital mathematics libraries called WebMIaS. It allows queries to be expressed by mathematicians through a faceted search interface. Users can combine standard textual autocompleted…

Digital Libraries · Computer Science 2016-03-27 Martin Líška , Petr Sojka , Michal Růžička

Calibration is a vital step in the development of rigorous digital models of diverse physical and chemical processes, yet one which is highly time- and labour-intensive. In this paper, we introduce a novel tool, Autonomous Calibration and…

Mixed-integer programming (MIP) is a well-established framework for computer-aided molecular design (CAMD). By precisely encoding the molecular space and score functions, e.g., a graph neural network, the molecular design problem is…

Computational Engineering, Finance, and Science · Computer Science 2024-11-26 Shiqiang Zhang , Christian W. Feldmann , Frederik Sandfort , Miriam Mathea , Juan S. Campos , Ruth Misener

We introduce NSC++, a header-only C++ library that simulates the evolution of the plasma and a decaying fluid in the early Universe. NSC++ can be used in C++ programs or called directly from python scripts without significant overhead.…

Cosmology and Nongalactic Astrophysics · Physics 2023-04-26 Dimitrios Karamitros

The chameleon model is a modified gravity theory that introduces an additional scalar field that couples to matter through a conformal coupling. This `chameleon field' possesses a screening mechanism through a nonlinear self-interaction…

General Relativity and Quantum Cosmology · Physics 2022-01-05 Chad Briddon , Clare Burrage , Adam Moss , Andrius Tamosiunas

We introduce CASC: a new, modern, and header-only C++ library which provides a data structure to represent arbitrary dimension abstract simplicial complexes (ASC) with user-defined classes stored directly on the simplices at each dimension.…

Mathematical Software · Computer Science 2019-08-14 C. T. Lee , J. B. Moody , R. E. Amaro , J. A. McCammon , M. Holst

Correct performance assessment is crucial for evaluating modern artificial intelligence algorithms in medicine like deep-learning based medical image segmentation models. However, there is no universal metric library in Python for…

Computer Vision and Pattern Recognition · Computer Science 2022-01-25 Dominik Müller , Dennis Hartmann , Philip Meyer , Florian Auer , Iñaki Soto-Rey , Frank Kramer