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Related papers: Double Proton Transfer in Hydrated Formic Acid Dim…

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The vibrational dynamics of formic acid monomer (FAM) and dimer (FAD) is investigated from machine-learned potential energy surfaces at the MP2 (PES$_{\rm MP2}$) and transfer-learned (PES$_{\rm TL}$) to the CCSD(T) levels of theory. The…

Chemical Physics · Physics 2022-03-14 Silvan Käser , Markus Meuwly

We have performed ab initio molecular dynamics simulations to study the nature of the synchronous double proton transfer in formic acid dimer. In order to understand the evolution of the bonding during the double proton transfer, we have…

Materials Science · Physics 2007-05-23 Sharan Shetty , Sourav Pal , Dilip G. Kanhere , Annick Goursot

The electric double layer (EDL) governs electrocatalysis, energy conversion, and storage, yet its atomic structure, capacitance, and reactivity remain elusive. Here we introduce a machine learning interatomic potential framework that…

Chemical Physics · Physics 2025-09-18 Xiaoyu Wang , Junmin Chen , Zezhu Zeng , Frederick Stein , Junho Lim , Bingqing Cheng

We cast the problem of protein transfer free energy within the formalism of density functional theory (DFT), treating the protein as a source of external potential that acts upon the solvent. Solvent excluded volume, solvent-accessible…

Biomolecules · Quantitative Biology 2013-10-07 Eric A Mills , Steven S Plotkin

We derive an expression for the drag rate (i.e., interlayer momentum transfer rate) for carriers in two coupled two-dimensional gases to lowest nonvanishing order in the screened interlayer electron--electron interaction, valid for {\sl…

Condensed Matter · Physics 2009-10-28 Karsten Flensberg , Ben Yu-Kuang Hu

Using conceptually and procedurally consistent density functional theory (DFT) calculations with an advanced meta-GGA exchange-correlation functional in ab initio molecular dynamics simulations, we determine the insulator-metal transition…

Hydrogen atom transfer (HAT) reactions are essential in many biological processes, such as radical migration in damaged proteins, but their mechanistic pathways remain incompletely understood. Simulating HAT is challenging due to the need…

Machine Learning · Computer Science 2025-11-25 Marlen Neubert , Patrick Reiser , Frauke Gräter , Pascal Friederich

The solvation structure of protons in aqueous media is highly relevant to electric properties and to proton transport in liquids and membranes. At ambient temperature, polar liquids display structural fluctuations on femto- to picosecond…

The interface between liquid water and the Pt(111) metal surface is characterized structurally and thermodynamically via reactive molecular dynamics (MD) simulations within the ReaxFF framework. The formation of a distinct buckled adsorbate…

Chemical Physics · Physics 2021-03-19 Christoph Karsten Jung , Laura Braunwarth , Andrey Sinyavskiy , Timo Jacob

Hydrated excess protons under hydrophobic confinement are a critical component of charge transport behavior and reactivity in nanoporous materials and biomolecular systems. Herein excess proton confinement effects are computationally…

Soft Condensed Matter · Physics 2020-06-04 Xinyou Ma , Chenghan Li , Alex B. F. Martinson , Gregory A. Voth

Benzoic acid (BA) is a model system for studying proton transfer (PT) reactions. The properties of solid BA subject to high pressure (exceeding 1 kbar = 0.1 GPa) are of particular interest due to the possibility of compression-tuning of the…

Chemical Physics · Physics 2022-01-26 Dominik Kurzydłowski

This work describes experiments on thermal dynamics of pure H2O excited by hydrodynamic cavitation, which has been reported to facilitate the spin conversion of para- and ortho-isomers at water interfaces. Previous measurements by NMR and…

Robotics · Computer Science 2023-01-31 Serge Kernbach

In this work a series of analyses are performed on ab initio molecular dynamics (AIMD) simulations of a hydrated excess proton in water to quantify the relative occurrence of concerted hopping events and <span>rattling</span> events, and…

Chemical Physics · Physics 2024-06-19 Christopher Arnsten , Chen Chen , Paul B. Calio , Chenghan Li , Gregory A. Voth

Rate theory and DFT calculations of hydrogen evolution reaction (HER) on MoS2 with Co, Ni and Pt impurities show the significance of dihydrogen (H2*) complex where both hydrogen atoms are interacting with the surface. Stabilization of such…

Materials Science · Physics 2024-09-05 Sander Ø. Hanslin , Hannes Jónsson , Jaakko Akola

Ab initio molecular dynamics (AIMD) with hybrid density functionals and plane wave basis is computationally expensive due to the high computational cost of exact exchange energy evaluation. Recently, we proposed a strategy to combine…

Chemical Physics · Physics 2021-01-11 Sagarmoy Mandal , Vaishali Thakkur , Nisanth N. Nair

We consider a proton-transfer (PT) system described by a proton-transfer reaction (PTR) coordinate and a rate promoting vibrational (RPV) coordinate interacting with a non-Markovian heat-bath. While dynamics of PT processes has been widely…

Chemical Physics · Physics 2020-06-03 Jiaji Zhang , Raffaele Borrelli , Yoshitaka Tanimura

We employ Molecular Dynamics (MD) and Time-Dependent Density Functional Theory (TDDFT) to explore the fluorescence of Hydrogen-bonded dimer and trimer structures of Cyclic FF (Phe- Phe) molecules. We show that in some of these…

Chemical Physics · Physics 2019-06-19 Sijo K. Joseph , Natalia Kuritz , Eldad Yahel , Nadezda Lapshina , Gil Rosenman , Amir Natan

We present a first--principles density functional theory (DFT) study of transition metal (TM = Ti, Cr, Mn, Fe, Co, Ni) functionalized two--dimensional polyaramid (2DPA) to explore their structural, electronic, and magnetic properties.…

Materials Science · Physics 2025-11-03 Ravi Trivedi , Chaithanya Purushottam Bhat , Shakti S. Ray , Debashis Bandyopadhyay

The electromagnetic form factors of the nucleon characterize the effect of its internal structure on its response to an electromagnetic probe as studied in elastic electron-nucleon scattering. These form factors are functions of the squared…

Nuclear Experiment · Physics 2015-08-07 Andrew J. R. Puckett

Liquid water exhibits several important anomalous properties in the vicinity of the melting temperature ($T_{\mathrm{m}}$) of ice Ih, including a higher density than ice and a density maximum at 4~$^{\circ}$C. Experimentally, an isotope…

Chemical Physics · Physics 2026-01-01 Yifan Li , Bingjia Yang , Chunyi Zhang , Axel Gomez , Pinchen Xie , Yixiao Chen , Pablo M. Piaggi , Roberto Car
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