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There is significant interest in using existing repositories of biological entities, relationships, and models to automate biological model assembly and extension. Current methods aggregate human-curated biological information into…
Computational modeling is crucial for understanding and analyzing complex systems. In biology, model creation is a human dependent task that requires reading hundreds of papers and conducting wet lab experiments, which would take days or…
Biomedical research results are being published at a high rate, and with existing search engines, the vast amount of published work is usually easily accessible. However, reproducing published results, either experimental data or…
The amount of text data available online is increasing at a very fast pace hence text summarization has become essential. Most of the modern recommender and text classification systems require going through a huge amount of data. Manually…
Querying new information from knowledge sources, in general, and published literature, in particular, aims to provide precise and quick answers to questions raised about a system under study. In this paper, we present ACCORDION (Automated…
Automatic text summarization, the automated process of shortening a text while reserving the main ideas of the document(s), is a critical research area in natural language processing. The aim of this literature review is to survey the…
We introduce and analyze the problem of the compilation of decision models from a decision-theoretic perspective. The techniques described allow us to evaluate various configurations of compiled knowledge given the nature of evidential…
With the tremendous increase in the amount of biological literature, developing automated methods for extracting big data from papers, building models and explaining big mechanisms becomes a necessity. We describe here our approach to…
Text generation system has made massive promising progress contributed by deep learning techniques and has been widely applied in our life. However, existing end-to-end neural models suffer from the problem of tending to generate…
An entirely novel synthesis combines the applied cognitive psychology of a task analytic approach with a neural cell assembly perspective that models both brain and mind function during task performance; similar cell assemblies could be…
Automation of machine learning model development is increasingly becoming an established research area. While automated model selection and automated data pre-processing have been studied in depth, there is, however, a gap concerning…
Analysing narratives through their social networks is an expanding field in quantitative literary studies. Manually extracting a social network from any narrative can be time consuming, so automatic extraction methods of varying complexity…
Text Simplification improves the readability of sentences through several rewriting transformations, such as lexical paraphrasing, deletion, and splitting. Current simplification systems are predominantly sequence-to-sequence models that…
Learning to generate fluent natural language from structured data with neural networks has become an common approach for NLG. This problem can be challenging when the form of the structured data varies between examples. This paper presents…
We propose a novel model-selection method for dynamic networks. Our approach involves training a classifier on a large body of synthetic network data. The data is generated by simulating nine state-of-the-art random graph models for dynamic…
Easy Read text is one of the main forms of access to information for people with reading difficulties. One of the key characteristics of this type of text is the requirement to split sentences into smaller grammatical segments, to…
Research in the field of automated vehicles, or more generally cognitive cyber-physical systems that operate in the real world, is leading to increasingly complex systems. Among other things, artificial intelligence enables an…
In recent years, text summarization methods have attracted much attention again thanks to the researches on neural network models. Most of the current text summarization methods based on neural network models are supervised methods which…
Sentiment-aware intelligent systems are essential to a wide array of applications. These systems are driven by language models which broadly fall into two paradigms: Lexicon-based and contextual. Although recent contextual models are…
Data augmentation, the artificial creation of training data for machine learning by transformations, is a widely studied research field across machine learning disciplines. While it is useful for increasing a model's generalization…