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Use of computational methods to predict gene regulatory networks (GRNs) from gene expression data is a challenging task. Many studies have been conducted using unsupervised methods to fulfill the task; however, such methods usually yield…

Machine Learning · Computer Science 2016-08-15 Nihir Patel , Jason T. L. Wang

Scientific modeling faces a tradeoff between the interpretability of mechanistic theory and the predictive power of machine learning. While existing hybrid approaches have made progress by incorporating domain knowledge into machine…

Machine Learning · Computer Science 2026-04-15 Carson Dudley , Reiden Magdaleno , Christopher Harding , Marisa Eisenberg

Singularly perturbed dynamical systems play a crucial role in climate dynamics and plasma physics. A powerful and well-known tool to address these systems is the Fenichel normal form, which significantly simplifies fast dynamics near slow…

Dynamical Systems · Mathematics 2025-05-14 Daniel A. Serino , Allen Alvarez Loya , Joshua W. Burby , Ioannis G. Kevrekidis , Qi Tang

Following early work on Hessian-free methods for deep learning, we study a stochastic generalized Gauss-Newton method (SGN) for training DNNs. SGN is a second-order optimization method, with efficient iterations, that we demonstrate to…

Machine Learning · Computer Science 2020-06-11 Matilde Gargiani , Andrea Zanelli , Moritz Diehl , Frank Hutter

Learning the optimized solution as a function of environmental parameters is effective in solving numerical optimization in real time for time-sensitive applications. Existing works of learning to optimize train deep neural networks (DNN)…

Machine Learning · Computer Science 2019-05-28 Chengjian Sun , Chenyang Yang

Foundational deep learning (DL) models are general models, trained on large, diverse, and unlabelled datasets, typically using self-supervised learning techniques have led to significant advancements especially in natural language…

Signal Processing · Electrical Eng. & Systems 2024-11-18 Ahmed Aboulfotouh , Ashkan Eshaghbeigi , Dimitrios Karslidis , Hatem Abou-Zeid

Deep spiking neural networks (SNNs) have emerged as a potential alternative to traditional deep learning frameworks, due to their promise to provide increased compute efficiency on event-driven neuromorphic hardware. However, to perform…

Neural and Evolutionary Computing · Computer Science 2021-07-28 Souvik Kundu , Gourav Datta , Massoud Pedram , Peter A. Beerel

Modern deep neural networks (DNNs) are typically trained with a global cross-entropy loss in a supervised end-to-end manner: neurons need to store their outgoing weights; training alternates between a forward pass (computation) and a…

Machine Learning · Computer Science 2025-11-03 Shuyan Lyu , Zhanzimo Wu , Junliang Du

Classification using supervised learning requires annotating a large amount of classes-balanced data for model training and testing. This has practically limited the scope of applications with supervised learning, in particular deep…

Computer Vision and Pattern Recognition · Computer Science 2022-12-29 Hao Zhen , Yucheng Shi , Jidong J. Yang , Javad Mohammadpour Vehni

For the purpose of effective suppression of the cycle-skipping phenomenon in full waveform inversion (FWI), we developed a Deep Neural Network (DNN) approach to predict the absent low-frequency components by exploiting the implicit relation…

Geophysics · Physics 2019-12-23 Wenyi Hu , Yuchen Jin , Xuqing Wu , Jiefu Chen

Stripe-like space target detection (SSTD) is crucial for space situational awareness. Traditional unsupervised methods often fail in low signal-to-noise ratio and variable stripe-like space targets scenarios, leading to weak generalization.…

Computer Vision and Pattern Recognition · Computer Science 2024-08-12 Zijian Zhu , Ali Zia , Xuesong Li , Bingbing Dan , Yuebo Ma , Hongfeng Long , Kaili Lu , Enhai Liu , Rujin Zhao

For prediction of clustered time-to-event data, we propose a new deep neural network based gamma frailty model (DNN-FM). An advantage of the proposed model is that the joint maximization of the new h-likelihood provides maximum likelihood…

Machine Learning · Statistics 2023-07-14 Hangbin Lee , IL DO HA , Youngjo Lee

State-of-the-art training algorithms for deep learning models are based on stochastic gradient descent (SGD). Recently, many variations have been explored: perturbing parameters for better accuracy (such as in Extragradient), limiting SGD…

Machine Learning · Computer Science 2022-03-23 Amirkeivan Mohtashami , Martin Jaggi , Sebastian U. Stich

Graph neural networks (GNNs) have recently exploded in popularity thanks to their broad applicability to ubiquitous graph-related problems such as quantum chemistry, drug discovery, and high energy physics. However, meeting demand for novel…

Machine Learning · Computer Science 2022-01-24 Stefan Abi-Karam , Yuqi He , Rishov Sarkar , Lakshmi Sathidevi , Zihang Qiao , Cong Hao

Antiferromagnetic materials are exciting quantum materials with rich physics and great potential for applications. It is highly demanded of the accurate and efficient theoretical method for determining the critical transition temperatures,…

Materials Science · Physics 2022-06-13 Jian-Gang Kong , Qing-Xu Li , Jian Li , Yu Liu , Jia-Ji Zhu

We propose an action recognition framework using Gen- erative Adversarial Networks. Our model involves train- ing a deep convolutional generative adversarial network (DCGAN) using a large video activity dataset without la- bel information.…

Computer Vision and Pattern Recognition · Computer Science 2018-01-23 Unaiza Ahsan , Chen Sun , Irfan Essa

Recent trends in lower precision, e.g. half-precision floating point, training have shown improved system performance and reduced memory usage for Deep Learning while maintaining accuracy. However, current GNN systems cannot achieve such…

Machine Learning · Computer Science 2025-09-17 Arnab Kanti Tarafder , Yidong Gong , Pradeep Kumar

Deep convolutional neural network (DCNN) based supervised learning is a widely practiced approach for large-scale image classification. However, retraining these large networks to accommodate new, previously unseen data demands high…

Computer Vision and Pattern Recognition · Computer Science 2020-03-26 Syed Shakib Sarwar , Aayush Ankit , Kaushik Roy

Momentum plays a crucial role in stochastic gradient-based optimization algorithms for accelerating or improving training deep neural networks (DNNs). In deep learning practice, the momentum is usually weighted by a well-calibrated…

Machine Learning · Computer Science 2020-12-04 Bao Wang , Qiang Ye

We developed a general deep learning framework, FluidGAN, capable of learning and predicting time-dependent convective flow coupled with energy transport. FluidGAN is thoroughly data-driven with high speed and accuracy and satisfies the…

Fluid Dynamics · Physics 2023-06-21 Changlin Jiang , Amir Barati Farimani