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Similarity matrix serves as a fundamental tool at the core of numerous downstream machine-learning tasks. However, missing data is inevitable and often results in an inaccurate similarity matrix. To address this issue, Similarity Matrix…

Machine Learning · Computer Science 2024-10-01 Changyi Ma , Runsheng Yu , Xiao Chen , Youzhi Zhang

We present a matrix factorization algorithm that scales to input matrices that are large in both dimensions (i.e., that contains morethan 1TB of data). The algorithm streams the matrix columns while subsampling them, resulting in low…

Optimization and Control · Mathematics 2016-12-04 Arthur Mensch , Julien Mairal , Gaël Varoquaux , Bertrand Thirion

The sparse factorization of a large matrix is fundamental in modern statistical learning. In particular, the sparse singular value decomposition and its variants have been utilized in multivariate regression, factor analysis, biclustering,…

Machine Learning · Statistics 2020-03-19 Kun Chen , Ruipeng Dong , Wanwan Xu , Zemin Zheng

Matrix decomposition is ubiquitous and has applications in various fields like speech processing, data mining and image processing to name a few. Under matrix decomposition, nonnegative matrix factorization is used to decompose a…

Optimization and Control · Mathematics 2019-05-14 R. Jyothi , P. Babu , R. Bahl

Non-negative matrix factorization (NMF) is an important technique for obtaining low dimensional representations of datasets. However, classical NMF does not take into account data that is collected at different times or in different…

Machine Learning · Computer Science 2023-11-21 James Chapman , Yotam Yaniv , Deanna Needell

A nonnegative matrix factorization (NMF) can be computed efficiently under the separability assumption, which asserts that all the columns of the given input data matrix belong to the cone generated by a (small) subset of them. The provably…

Optimization and Control · Mathematics 2017-11-22 Nicolas Gillis , Robert Luce

Symmetric nonnegative matrix factorization (NMF), a special but important class of the general NMF, is demonstrated to be useful for data analysis and in particular for various clustering tasks. Unfortunately, designing fast algorithms for…

Machine Learning · Computer Science 2018-11-15 Zhihui Zhu , Xiao Li , Kai Liu , Qiuwei Li

Symmetric nonnegative matrix factorization (SNMF) is equivalent to computing a symmetric nonnegative low rank approximation of a data similarity matrix. It inherits the good data interpretability of the well-known nonnegative matrix…

Numerical Analysis · Computer Science 2017-10-11 Qingjiang Shi , Haoran Sun , Songtao Lu , Mingyi Hong , Meisam Razaviyayn

This paper describes a new approach, based on linear programming, for computing nonnegative matrix factorizations (NMFs). The key idea is a data-driven model for the factorization where the most salient features in the data are used to…

Optimization and Control · Mathematics 2013-02-05 Victor Bittorf , Benjamin Recht , Christopher Re , Joel A. Tropp

Matrix factorization is a popular approach for large-scale matrix completion. The optimization formulation based on matrix factorization can be solved very efficiently by standard algorithms in practice. However, due to the non-convexity…

Machine Learning · Computer Science 2016-11-18 Ruoyu Sun , Zhi-Quan Luo

Nonnegative matrix factorization (NMF) has become a widely used tool for the analysis of high-dimensional data as it automatically extracts sparse and meaningful features from a set of nonnegative data vectors. We first illustrate this…

Machine Learning · Statistics 2014-12-10 Nicolas Gillis

Numerous algorithms are used for nonnegative matrix factorization under the assumption that the matrix is nearly separable. In this paper, we show how to make these algorithms efficient for data matrices that have many more rows than…

Machine Learning · Computer Science 2018-01-08 Austin R. Benson , Jason D. Lee , Bartek Rajwa , David F. Gleich

Simplex-structured matrix factorization (SSMF) is a generalization of nonnegative matrix factorization, a fundamental interpretable data analysis model, and has applications in hyperspectral unmixing and topic modeling. To obtain…

Numerical Analysis · Mathematics 2025-01-10 Maryam Abdolali , Giovanni Barbarino , Nicolas Gillis

Non-negative matrix factorization (NMF) is a key technique for feature extraction and widely used in source separation. However, existing algorithms may converge to poor local minima, or to one of several minima with similar objective value…

Machine Learning · Computer Science 2024-10-30 Youdong Guo , Timothy E. Holy

Non-negative matrix factorisation (NMF) is a widely used tool for unsupervised learning and feature extraction, with applications ranging from genomics to text analysis and signal processing. Standard formulations of NMF are typically…

Machine Learning · Computer Science 2026-03-11 Elisabeth Sommer James , Asger Hobolth , Marta Pelizzola

Matrix factorization techniques have been widely used as a method for collaborative filtering for recommender systems. In recent times, different variants of deep learning algorithms have been explored in this setting to improve the task of…

Machine Learning · Computer Science 2019-03-26 Vaibhav Krishna , Tian Guo , Nino Antulov-Fantulin

In this article, we study algorithms for nonnegative matrix factorization (NMF) in various applications involving streaming data. Utilizing the continual nature of the data, we develop a fast two-stage algorithm for highly efficient and…

Optimization and Control · Mathematics 2021-01-22 Ran Gu , Qiang Du , Simon J. L. Billinge

Nonnegative matrix factorization can be used to automatically detect topics within a corpus in an unsupervised fashion. The technique amounts to an approximation of a nonnegative matrix as the product of two nonnegative matrices of lower…

Computation and Language · Computer Science 2022-12-21 Michael R. Lindstrom , Xiaofu Ding , Feng Liu , Anand Somayajula , Deanna Needell

Dimensionality reduction methods for count data are critical to a wide range of applications in medical informatics and other fields where model interpretability is paramount. For such data, hierarchical Poisson matrix factorization (HPF)…

Sparse matrix reordering can significantly reduce the fill-in during matrix factorization, thereby decreasing the computational and storage requirements in sparse matrix computations. Finding a minimal fill-in ordering is known to be an…

Machine Learning · Computer Science 2026-05-19 Ziwei Li , Tao Yuan , Shuzi Niu , Huiyuan Li
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