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Dynamic programming (DP) based algorithms are essential yet compute-intensive parts of numerous bioinformatics pipelines, which typically involve populating a 2-D scoring matrix based on a recursive formula, optionally followed by a…

Hardware Architecture · Computer Science 2024-11-07 Yingqi Cao , Anshu Gupta , Jason Liang , Yatish Turakhia

Probabilistic programming provides a convenient lingua franca for writing succinct and rigorous descriptions of probabilistic models and inference tasks. Several probabilistic programming languages, including Anglican, Church or Hakaru,…

Logic in Computer Science · Computer Science 2020-02-26 Tetsuya Sato , Alejandro Aguirre , Gilles Barthe , Marco Gaboardi , Deepak Garg , Justin Hsu

Ensuring the reliability and verifiability of large language model (LLM)-enabled systems remains a significant challenge in software engineering. We propose a probabilistic framework for systematically analyzing and improving these systems…

Software Engineering · Computer Science 2025-04-15 Juan Manuel Baldonado , Flavia Bonomo-Braberman , Víctor Adrián Braberman

(Neal and Hinton, 1998) recast maximum likelihood estimation of any given latent variable model as the minimization of a free energy functional $F$, and the EM algorithm as coordinate descent applied to $F$. Here, we explore alternative…

Computation · Statistics 2023-02-21 Juan Kuntz , Jen Ning Lim , Adam M. Johansen

Intelligent systems sometimes need to infer the probable goals of people, cars, and robots, based on partial observations of their motion. This paper introduces a class of probabilistic programs for formulating and solving these problems.…

Artificial Intelligence · Computer Science 2017-04-19 Marco F. Cusumano-Towner , Alexey Radul , David Wingate , Vikash K. Mansinghka

A central goal of probabilistic programming languages (PPLs) is to separate modelling from inference. However, this goal is hard to achieve in practice. Users are often forced to re-write their models in order to improve efficiency of…

Programming Languages · Computer Science 2022-02-21 Maria I. Gorinova , Andrew D. Gordon , Charles Sutton , Matthijs Vákár

Inductive Logic Programming (ILP) combines rule-based and statistical artificial intelligence methods, by learning a hypothesis comprising a set of rules given background knowledge and constraints for the search space. We focus on extending…

Artificial Intelligence · Computer Science 2018-02-01 Mishal Kazmi , Peter Schüller , Yücel Saygın

We present a novel static analysis technique to derive higher moments for program variables for a large class of probabilistic loops with potentially uncountable state spaces. Our approach is fully automatic, meaning it does not rely on…

Programming Languages · Computer Science 2022-12-21 Marcel Moosbrugger , Miroslav Stankovič , Ezio Bartocci , Laura Kovács

Large Language Models (LLMs) are increasingly deployed across diverse domains, raising the need for rigorous reliability assessment methods. Existing benchmark-based evaluations primarily offer descriptive statistics of model accuracy over…

Software Engineering · Computer Science 2026-01-30 Robab Aghazadeh-Chakherlou , Qing Guo , Siddartha Khastgir , Peter Popov , Xiaoge Zhang , Xingyu Zhao

In this paper, we develop approximate dynamic programming methods for stochastic systems modeled as Markov Decision Processes, given both soft performance criteria and hard constraints in a class of probabilistic temporal logic called…

Optimization and Control · Mathematics 2018-10-08 Lening Li , Jie Fu

Large language models (LLMs) excel at zero-shot inference but continue to struggle with complex, multi-step reasoning. Recent methods that augment LLMs with intermediate reasoning steps such as Chain of Thought (CoT) and Program of Thought…

Computation and Language · Computer Science 2025-10-28 Adam Stein , Neelay Velingker , Mayur Naik , Eric Wong

Probabilistic extensions of logic programming languages, such as ProbLog, integrate logical reasoning with probabilistic inference to evaluate probabilities of output relations; however, prior work does not account for potential statistical…

Programming Languages · Computer Science 2025-08-22 Jingbo Wang , Shashin Halalingaiah , Weiyi Chen , Chao Wang , Isil Dillig

Artificial intelligence has recently experienced remarkable advances, fueled by large models, vast datasets, accelerated hardware, and, last but not least, the transformative power of differentiable programming. This new programming…

Machine Learning · Computer Science 2025-06-25 Mathieu Blondel , Vincent Roulet

The integration of Large Language Models (LLMs) into evolutionary frameworks has established a new paradigm for automated heuristic discovery. Despite their promise, these methods typically search in the discrete space of program syntax,…

Artificial Intelligence · Computer Science 2026-05-19 Cheikh Ahmed , Mahdi Mostajabdaveh , Zirui Zhou

Computing the probability of a formula given the probabilities or weights associated with other formulas is a natural extension of logical inference to the probabilistic setting. Surprisingly, this problem has received little attention in…

Artificial Intelligence · Computer Science 2012-03-19 Vibhav Gogate , Pedro Domingos

Probabilistic model checking computes probabilities and expected values related to designated behaviours of interest in Markov models. As a formal verification approach, it is applied to critical systems; thus we trust that probabilistic…

Logic in Computer Science · Computer Science 2021-10-19 Arnd Hartmanns

Large language models (LLMs) excel on multiple-choice clinical diagnosis benchmarks, yet it is unclear how much of this performance reflects underlying probabilistic reasoning. We study this through questions from MedQA, where the task is…

Computation and Language · Computer Science 2025-12-16 Furong Jia , Yuan Pu , Finn Guo , Monica Agrawal

Probabilistic programming languages aim to describe and automate Bayesian modeling and inference. Modern languages support programmable inference, which allows users to customize inference algorithms by incorporating guide programs to…

Programming Languages · Computer Science 2021-04-09 Di Wang , Jan Hoffmann , Thomas Reps

In this paper we introduce RankPL, a modeling language that can be thought of as a qualitative variant of a probabilistic programming language with a semantics based on Spohn's ranking theory. Broadly speaking, RankPL can be used to…

Artificial Intelligence · Computer Science 2017-05-23 Tjitze Rienstra

Complex networks theory has commonly been used for modelling and understanding the interactions taking place between the elements composing complex systems. More recently, the use of generative models has gained momentum, as they allow…

Physics and Society · Physics 2016-05-19 Massimiliano Zanin , Marco Correia , Pedro A. C. Sousa , Jorge Cruz