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Structure-based Deep Fusion models were recently shown to outperform several physics- and machine learning-based protein-ligand binding affinity prediction methods. As part of a multi-institutional COVID-19 pandemic response, over 500…

Computer-aided diagnosis (CAD) systems stand out as potent aids for physicians in identifying the novel Coronavirus Disease 2019 (COVID-19) through medical imaging modalities. In this paper, we showcase the integration and reliable and fast…

Image and Video Processing · Electrical Eng. & Systems 2024-03-13 Demetris Gerogiannis , Anastasios Arsenos , Dimitrios Kollias , Dimitris Nikitopoulos , Stefanos Kollias

The COVID-19 pandemic underscored the importance of reliable, noninvasive diagnostic tools for robust public health interventions. In this work, we fused magnetic respiratory sensing technology (MRST) with machine learning (ML) to create a…

One of the critical tools for early detection and subsequent evaluation of the incidence of lung diseases is chest radiography. This study presents a real-world implementation of a convolutional neural network (CNN) based Carebot Covid app…

Image and Video Processing · Electrical Eng. & Systems 2022-03-22 Daniel Kvak , Marian Bendik , Anna Chromcova

COVID-19 pandemic continues to spread rapidly over the world and causes a tremendous crisis in global human health and the economy. Its early detection and diagnosis are crucial for controlling the further spread. Many deep learning-based…

Image and Video Processing · Electrical Eng. & Systems 2022-12-21 Yujia Xu , Hak-Keung Lam , Guangyu Jia , Jian Jiang , Junkai Liao , Xinqi Bao

With the rapid spread of the novel coronavirus (COVID-19) across the globe and its continuous mutation, it is of pivotal importance to design a system to identify different known (and unknown) variants of SARS-CoV-2. Identifying particular…

Quantitative Methods · Quantitative Biology 2021-10-13 Sarwan Ali , Bikram Sahoo , Naimat Ullah , Alexander Zelikovskiy , Murray Patterson , Imdadullah Khan

The world has witnessed unprecedented human and economic loss from the COVID-19 disease, caused by the novel coronavirus SARS-CoV-2. Extensive research is being conducted across the globe to identify therapeutic agents against the…

Biomolecules · Quantitative Biology 2020-04-09 Rohit Batra , Henry Chan , Ganesh Kamath , Rampi Ramprasad , Mathew J. Cherukara , Subramanian Sankaranarayanan

COVID-19 is an infection caused by SARS-CoV-2 (Severe Acute Respiratory Syndrome coronavirus 2), which has caused a global outbreak. Current research efforts are focused on the understanding of the molecular mechanisms involved in…

We propose two-stage adaptive pooling schemes, 2-STAP and 2-STAMP, for detecting COVID-19 using real-time reverse transcription quantitative polymerase chain reaction (RT-qPCR) test kits. Similar to the Tapestry scheme of Ghosh et al., the…

Information Theory · Computer Science 2020-07-07 Anoosheh Heidarzadeh , Krishna R. Narayanan

We have developed a globally applicable diagnostic Covid-19 model by augmenting the classical SIR epidemiological model with a neural network module. Our model does not rely upon previous epidemics like SARS/MERS and all parameters are…

Physics and Society · Physics 2020-11-24 Raj Dandekar , Chris Rackauckas , George Barbastathis

The world has suffered from COVID-19 (SARS-CoV-2) for the last two years, causing much damage and change in people's daily lives. Thus, automated detection of COVID-19 utilizing deep learning on chest computed tomography (CT) scans became…

Image and Video Processing · Electrical Eng. & Systems 2022-07-05 Okchul Jung , Dong Un Kang , Gwanghyun Kim , Se Young Chun

The infection of respiratory coronavirus disease 2019 (COVID-19) starts with the upper respiratory tract and as the virus grows, the infection can progress to lungs and develop pneumonia. The conventional way of COVID-19 diagnosis is…

Image and Video Processing · Electrical Eng. & Systems 2021-06-08 Sanjay Kumar Sonbhadra , Sonali Agarwal , P. Nagabhushan

The COVID-19 pandemic is one of the most challenging healthcare crises during the 21st century. As the virus continues to spread on a global scale, the majority of efforts have been on the development of vaccines and the mass immunization…

Machine Learning · Computer Science 2021-09-07 Meysam Effati , Yu-Chen Sun , Hani E. Naguib , Goldie Nejat

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infectivity is a major concern in coronavirus disease 2019 (COVID-19) prevention and economic reopening. However, rigorous determination of SARS-COV-2 infectivity is essentially…

Biomolecules · Quantitative Biology 2020-06-01 Jiahui Chen , Rui Wang , Menglun Wang , Guo-Wei Wei

Predicting an accurate expected number of future COVID-19 cases is essential to properly evaluate the effectiveness of any treatment or preventive measure. This study aimed to identify the most appropriate mathematical model to…

Populations and Evolution · Quantitative Biology 2021-04-07 Natalia Blanco , Kristen Stafford , Marie-Claude Lavoie , Axel Brandenburg , Maria W. Gorna , Matthew Merski

COVID-19 has affected more than 223 countries worldwide. There is a pressing need for non invasive, low costs and highly scalable solutions to detect COVID-19, especially in low-resource countries where PCR testing is not ubiquitously…

Sound · Computer Science 2022-09-09 Wafaa Aljbawi , Sami O. Simmons , Visara Urovi

Monitoring the incidence of new infections during a pandemic is critical for an effective public health response. General population prevalence surveys for SARS-CoV-2 can provide high-quality data to estimate incidence. However, estimation…

The corona virus disease 2019 (COVID-19) caused by the novel corona virus has an exponential rate of infection. COVID-19 is particularly notorious as the onset of symptoms in infected patients are usually delayed and there exists a large…

Methodology · Statistics 2020-04-16 Lakshmi N. Theagarajan

A molecular and cellular understanding of how SARS-CoV-2 variably infects and causes severe COVID-19 remains a bottleneck in developing interventions to end the pandemic. We sought to use deep learning to study the biology of SARS-CoV-2…

Machine Learning · Computer Science 2020-12-16 Arijit Sehanobish , Neal G. Ravindra , David van Dijk

Accurate and reliable forecasting of emerging dominant severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants enables policymakers and vaccine makers to get prepared for future waves of infections. The last three waves of…

Populations and Evolution · Quantitative Biology 2022-10-19 Jiahui Chen , Rui Wang , Yuta Hozumi , Gengzhuo Liu , Yuchi Qiu , Xiaoqi Wei , Guo-Wei Wei