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This study evaluated the effect of BioBERT in medical text processing for the task of medical named entity recognition. Through comparative experiments with models such as BERT, ClinicalBERT, SciBERT, and BlueBERT, the results showed that…

Computation and Language · Computer Science 2024-12-12 Jiacheng Hu , Runyuan Bao , Yang Lin , Hanchao Zhang , Yanlin Xiang

Entity matching (EM) identifies data records that refer to the same real-world entity. Despite the effort in the past years to improve the performance in EM, the existing methods still require a huge amount of labeled data in each domain…

Machine Learning · Computer Science 2022-04-21 Mohamed Trabelsi , Jeff Heflin , Jin Cao

Recognizing useful named entities plays a vital role in medical information processing, which helps drive the development of medical area research. Deep learning methods have achieved good results in medical named entity recognition (NER).…

Computation and Language · Computer Science 2022-11-10 Junzhe Jiang , Mingyue Cheng , Qi Liu , Zhi Li , Enhong Chen

Named-entity recognition (NER) is a task that typically requires large annotated datasets, which limits its applicability across domains with varying entity definitions. This paper addresses few-shot NER, aiming to transfer knowledge to new…

Computation and Language · Computer Science 2024-12-13 Ayoub Hammal , Benno Uthayasooriyar , Caio Corro

Previous work on clinical relation extraction from free-text sentences leveraged information about semantic types from clinical knowledge bases as a part of entity representations. In this paper, we exploit additional evidence by also…

Computation and Language · Computer Science 2025-03-10 Linh Le , Guido Zuccon , Gianluca Demartini , Genghong Zhao , Xia Zhang

Pre-trained transformer language models (LMs) have in recent years become the dominant paradigm in applied NLP. These models have achieved state-of-the-art performance on tasks such as information extraction, question answering, sentiment…

Computation and Language · Computer Science 2025-04-14 Aidan Mannion , Thierry Chevalier , Didier Schwab , Lorraine Geouriot

Named entity recognition (NER) is an information extraction technique that aims to locate and classify named entities (e.g., organizations, locations,...) within a document into predefined categories. Correctly identifying these phrases…

Computation and Language · Computer Science 2021-12-16 Tran Thi Hong Hanh , Antoine Doucet , Nicolas Sidere , Jose G. Moreno , Senja Pollak

Social media platforms serve as invaluable sources of user-generated content, offering insights into various aspects of human behavior. Named Entity Recognition (NER) plays a crucial role in analyzing such content by identifying and…

Information Retrieval · Computer Science 2025-01-15 Mosab Alfaqeeh

Named Entity Recognition (NER) performance often degrades rapidly when applied to target domains that differ from the texts observed during training. When in-domain labelled data is available, transfer learning techniques can be used to…

Computation and Language · Computer Science 2020-05-01 Pierre Lison , Aliaksandr Hubin , Jeremy Barnes , Samia Touileb

Knowledge sharing is crucial in healthcare, especially when leveraging data from multiple clinical sites to address data scarcity, reduce costs, and enable timely interventions. Transfer learning can facilitate cross-site knowledge…

Computation and Language · Computer Science 2024-09-24 Yuhe Gao , Runxue Bao , Yuelyu Ji , Yiming Sun , Chenxi Song , Jeffrey P. Ferraro , Ye Ye

Supervised models trained to predict properties from representations have been achieving high accuracy on a variety of tasks. For instance, the BERT family seems to work exceptionally well on the downstream task from NER tagging to the…

Computation and Language · Computer Science 2020-12-22 Tejas Vaidhya , Ayush Kaushal

Medical text embedding models are foundational to a wide array of healthcare applications, ranging from clinical decision support and biomedical information retrieval to medical question answering, yet they remain hampered by two critical…

Computation and Language · Computer Science 2025-08-07 Mohammad Khodadad , Ali Shiraee Kasmaee , Mahdi Astaraki , Hamidreza Mahyar

The field of clinical natural language processing has been advanced significantly since the introduction of deep learning models. The self-supervised representation learning and the transfer learning paradigm became the methods of choice in…

Computation and Language · Computer Science 2020-04-27 Andrey Kormilitzin , Nemanja Vaci , Qiang Liu , Alejo Nevado-Holgado

Entity disambiguation, or mapping a phrase to its canonical representation in a knowledge base, is a fundamental step in many natural language processing applications. Existing techniques based on global ranking models fail to capture the…

Computation and Language · Computer Science 2016-04-21 Tiep Mai , Bichen Shi , Patrick K. Nicholson , Deepak Ajwani , Alessandra Sala

Identifying named entities is, in general, a practical and challenging task in the field of Natural Language Processing. Named Entity Recognition on the code-mixed text is further challenging due to the linguistic complexity resulting from…

Computation and Language · Computer Science 2022-06-16 Suman Dowlagar , Radhika Mamidi

Entity linking (EL) for biomedical text is typically benchmarked on English-only corpora with flat mentions, leaving the more realistic scenario of nested and multilingual mentions largely unexplored. We present our system for the BioNNE…

Computation and Language · Computer Science 2025-09-15 Chunyu Li , Xindi Zheng , Siqi Liu

Biomedical entity linking (BEL) is the task of grounding entity mentions to a knowledge base. It plays a vital role in information extraction pipelines for the life sciences literature. We review recent work in the field and find that, as…

Computation and Language · Computer Science 2023-08-23 Samuele Garda , Leon Weber-Genzel , Robert Martin , Ulf Leser

Recent Named Entity Recognition (NER) advancements have significantly enhanced text classification capabilities. This paper focuses on spoken NER, aimed explicitly at spoken document retrieval, an area not widely studied due to the lack of…

Computation and Language · Computer Science 2024-09-12 Moncef Benaicha , David Thulke , M. A. Tuğtekin Turan

The increasing depth of parametric domain knowledge in large language models (LLMs) is fueling their rapid deployment in real-world applications. Understanding model vulnerabilities in high-stakes and knowledge-intensive tasks is essential…

Computation and Language · Computer Science 2024-12-02 R. Patrick Xian , Alex J. Lee , Satvik Lolla , Vincent Wang , Qiming Cui , Russell Ro , Reza Abbasi-Asl

Zero-resource named entity recognition (NER) severely suffers from data scarcity in a specific domain or language. Most studies on zero-resource NER transfer knowledge from various data by fine-tuning on different auxiliary tasks. However,…

Computation and Language · Computer Science 2021-07-23 Ying Zhang , Fandong Meng , Yufeng Chen , Jinan Xu , Jie Zhou