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Stomata play a crucial role in regulating plant physiological processes and reflecting environmental responses. However, accurate and high-throughput stomatal phenotyping remains challenging, as conventional approaches rely on destructive…

Computer Vision and Pattern Recognition · Computer Science 2026-04-22 Quanling Zhao , Meng'en Qin , Yanfeng Sun , Yuan Miao , Xiaohui Yang

One of the most challenging problems in microbiology is to understand how a small fraction of microbes that resists killing by antibiotics can emerge in a population of genetically identical cells, the phenomenon known as persistence or…

Subcellular Processes · Quantitative Biology 2015-06-17 Andrea Rocco , Andrzej M. Kierzek , Johnjoe McFadden

An image-based deep learning framework is developed in this paper to predict damage and failure in microstructure-dependent composite materials. The work is motivated by the complexity and computational cost of high-fidelity simulations of…

Machine Learning · Computer Science 2022-06-07 Reza Sepasdar , Anuj Karpatne , Maryam Shakiba

Biofilm infections on medical implants are difficult to eradicate because insufficient nutrient availability promotes antibiotic-tolerant persister cells that survive treatment and reseed growth. Existing mathematical models usually omit…

Populations and Evolution · Quantitative Biology 2025-09-23 Parna Mandal , Nigel J. Mottram , Sean McGinty

Accurate quantification of the extent of lung pathological patterns (fibrosis, ground-glass opacity, emphysema, consolidation) is prerequisite for diagnosis and follow-up of interstitial lung diseases. However, segmentation is challenging…

Image and Video Processing · Electrical Eng. & Systems 2025-01-08 Rezkellah Noureddine Khiati , Pierre-Yves Brillet , Radu Ispas , Catalin Fetita

A distinguishing feature of a multicellular living system is that it operates at various scales, from the intracellular to organismal. Very little is known at present on how tissue level properties are related to cell and subcellular…

Biological Physics · Physics 2007-06-26 Elijah Flenner , Francoise Marga , Adrian Neagu , Ioan Kosztin , Gabor Forgacs

Nutrient-Phytoplankton-Zooplankton-Detritus (NPZD) models, describing the interactions between phytoplankton, zooplankton systems, and their ecosystem, are used to predict their ecological and evolutionary population dynamics. These…

Populations and Evolution · Quantitative Biology 2023-07-13 Joshua C. Macdonald , Hayriye Gulbudak

Early diagnosis of plant diseases is critical for global food safety, yet most AI solutions lack the generalization required for real-world agricultural diversity. These models are typically constrained to specific species, failing to…

Computer Vision and Pattern Recognition · Computer Science 2025-08-26 Saif Ur Rehman Khan , Muhammad Nabeel Asim , Sebastian Vollmer , Andreas Dengel

The first step toward Seed Phenotyping i.e. the comprehensive assessment of complex seed traits such as growth, development, tolerance, resistance, ecology, yield, and the measurement of pa-rameters that form more complex traits is the…

Computer Vision and Pattern Recognition · Computer Science 2021-03-30 Venkat Margapuri , Mitchell Neilsen

Medical imaging is a critical initial tool used by clinicians to determine a patient's cancer diagnosis, allowing for faster intervention and more reliable patient prognosis. At subsequent stages of patient diagnosis, genetic information is…

Computer Vision and Pattern Recognition · Computer Science 2025-12-03 Rahul Mehta

Do ecosystems primarily reflect evolutionary history or current environment? Predicting land-atmosphere exchange hinges on this unresolved question. Plant traits adapt to particular environments over evolutionary timescales, yet their…

Geophysics · Physics 2025-12-16 Jianing Fang , Kevin Bowman , Wenli Zhao , Xu Lian , Pierre Gentine

Bio-hybrid systems---close couplings of natural organisms with technology---are high potential and still underexplored. In existing work, robots have mostly influenced group behaviors of animals. We explore the possibilities of mixing…

Neural and Evolutionary Computing · Computer Science 2018-04-20 Mostafa Wahby , Mary Katherine Heinrich , Daniel Nicolas Hofstadler , Payam Zahadat , Sebastian Risi , Phil Ayres , Thomas Schmickl , Heiko Hamann

Crop diseases are a major threat to food security and their rapid identification is important to prevent yield loss. Swift identification of these diseases are difficult due to the lack of necessary infrastructure. Recent advances in…

Computer Vision and Pattern Recognition · Computer Science 2022-09-27 Nisar Ahmed , Hafiz Muhammad Shahzad Asif , Gulshan Saleem , Muhammad Usman Younus

A central challenge in materials science is characterizing chemical processes that are elusive to direct measurement, particularly in functional materials operating under realistic conditions. Here, we demonstrate that mechanical strain…

Materials Science · Physics 2025-09-04 Royal C. Ihuaenyi , Hongbo Zhao , Ruqing Fang , Ruobing Bai , Martin Z. Bazant , Juner Zhu

Plant diseases pose significant challenges to farmers and the agricultural sector at large. However, early detection of plant diseases is crucial to mitigating their effects and preventing widespread damage, as outbreaks can severely impact…

Computer Vision and Pattern Recognition · Computer Science 2025-07-02 Bosubabu Sambana , Hillary Sunday Nnadi , Mohd Anas Wajid , Nwosu Ogochukwu Fidelia , Claudia Camacho-Zuñiga , Henry Dozie Ajuzie , Edeh Michael Onyema

Compartment models of cell culture are widely used in cytology, pharmacology, toxicology and other fields. Numerical simulation, data modeling and prediction of compartment models can be realized by traditional differential equation…

Quantitative Methods · Quantitative Biology 2022-06-13 Jiahao Ma

Phakopsora pachyrhizi is a biotrophic fungus that requires living plant tissue to survive in the wild for extended periods. The fungus causes Asian rust and costs billions of US dollars every year for its control in South American soy…

Lung cancer is a condition where there is abnormal growth of malignant cells that spread in an uncontrollable fashion in the lungs. Some common treatment strategies are surgery, chemotherapy, and radiation which aren't the best options due…

Computer Vision and Pattern Recognition · Computer Science 2026-03-18 Ann Rachel , Pranav M Pawar , Mithun Mukharjee , Raja M , Tojo Mathew

Microstructural evolution, particularly grain growth, plays a critical role in shaping the physical, optical, and electronic properties of materials. Traditional phase-field modeling accurately simulates these phenomena but is…

Materials Science · Physics 2026-04-15 Iman Peivaste , Ahmed Makradi , Salim Belouettar

This paper presents a framework which uses computer vision algorithms to standardise images and analyse them for identifying crop diseases automatically. The tools are created to bridge the information gap between farmers, advisory call…

Computer Vision and Pattern Recognition · Computer Science 2019-12-23 Nantheera Anantrasirichai , Sion Hannuna , Nishan Canagarajah