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In therapeutic design, balancing various physiochemical properties is crucial for molecule development, similar to how Multiparameter Optimization (MPO) evaluates multiple variables to meet a primary goal. While many molecular features can…

Biomolecules · Quantitative Biology 2024-01-03 Agustin Kruel , Andrew D. McNaughton , Neeraj Kumar

A new type of robust estimation problem is introduced where the goal is to recover a statistical model that has been corrupted after it has been estimated from data. Methods are proposed for "repairing" the model using only the design and…

Statistics Theory · Mathematics 2020-05-21 Chao Gao , John Lafferty

Motivation: Estimating parameters from data is a key stage of the modelling process, particularly in biological systems where many parameters need to be estimated from sparse and noisy data sets. Over the years, a variety of heuristics have…

Quantitative Methods · Quantitative Biology 2011-11-07 Mariano Beguerisse-Diaz , Baojun Wang , Radhika Desikan , Mauricio Barahona

Fibrous dysplasia (FD) is a mosaic non-inheritable genetic disorder of the skeleton in which normal bone is replaced by structurally unsound fibro-osseous tissue. There is no curative treatment for FD, partly because its pathophysiology is…

This paper considers a distributed adaptive optimization problem, where all agents only have access to their local cost functions with a common unknown parameter, whereas they mean to collaboratively estimate the true parameter and find the…

Optimization and Control · Mathematics 2025-09-03 Yaqun Yang , Jinlong Lei , Guanghui Wen , Yiguang Hong

Finite element model updating of a structure made of linear elastic materials is based on the solution of a minimization problem. The goal is to find some unknown parameters of the finite element model (elastic moduli, mass densities,…

Computational Engineering, Finance, and Science · Computer Science 2021-02-24 Maria Girardi , Cristina Padovani , Daniele Pellegrini , Leonardo Robol

In this paper, we present the description of a simplified model of the dynamic of a mono-specific even-aged forest. The model studied is a tree-growth model based on a system of two ordinary differential equations concerning the tree basal…

Optimization and Control · Mathematics 2014-01-21 Patrice Loisel , Jean-François Dhôte

We describe a method for modeling the geometry of porous materials. The approach enables the independent selection of crucial parameters, including porosity, pore size distribution, pore shape, and connectivity. Consequently, it can…

Materials Science · Physics 2024-04-19 Felix Buchele , Patric Müller , Michael Blank , Thorsten Pöschel

A 3-D porous apatite scaffold (B-HA), recently obtained through biomorphic transformation of a natural wood, is investigated on its multi-scale porous structure determining superior mechanical properties and biological behaviour. B-HA shows…

A robust algorithm is proposed to reconstruct the spatial support and the Lam\'e parameters of multiple inclusions in a homogeneous background elastic material using a few measurements of the displacement field over a finite collection of…

Numerical Analysis · Mathematics 2017-02-27 Jaejun Yoo , Younghoon Jung , Mikyoung Lim , Jong Chul Ye , Abdul Wahab

Reduced order models are computationally inexpensive approximations that capture the important dynamical characteristics of large, high-fidelity computer models of physical systems. This paper applies machine learning techniques to improve…

Machine Learning · Computer Science 2015-11-11 Azam Moosavi , Razvan Stefanescu , Adrian Sandu

Recurrence plot based methods are highly efficient and widely accepted tools for the investigation of time series or one-dimensional data. We present an extension of the recurrence plots and their quantifications in order to study recurrent…

Chaotic Dynamics · Physics 2007-06-13 Norbert Marwan , Juergen Kurths , Peter Saparin

Tendon-bone enthesis connects tendon and bone, two mechanically dissimilar materials, while effectively minimizing stress concentrations, a capability rarely achieved in engineering materials. Its hierarchical organization and graded…

Soft Condensed Matter · Physics 2026-04-14 Zhangke Yang , Zhaoxu Meng

Drug optimization has become increasingly crucial in light of fast-mutating virus strains and drug-resistant cancer cells. Nevertheless, it remains challenging as it necessitates retaining the beneficial properties of the original drug…

Biomolecules · Quantitative Biology 2025-08-12 Xuefeng Liu , Songhao Jiang , Ian Foster , Jinbo Xu , Rick Stevens

Bioprinting is an enabling biofabrication technique to create heterogeneous tissue constructs according to patient-specific geometries and compositions. Optimization of bioinks as per requirements for specific tissue applications is a…

Materials Science · Physics 2022-10-25 Abhinaba Banerjee , Sudipto Datta , Amit Roy Chowdhury , Pallab Datta

Bone mineral density (BMD) is a clinically critical indicator of osteoporosis, usually measured by dual-energy X-ray absorptiometry (DEXA). Due to the limited accessibility of DEXA machines and examinations, osteoporosis is often…

Image and Video Processing · Electrical Eng. & Systems 2021-05-21 Kang Zheng , Yirui Wang , Xiaoyun Zhou , Fakai Wang , Le Lu , Chihung Lin , Lingyun Huang , Guotong Xie , Jing Xiao , Chang-Fu Kuo , Shun Miao

The basic problem of shape complementarity analysis appears fundamental to applications as diverse as mechanical design, assembly automation, robot motion planning, micro- and nano-fabrication, protein-ligand binding, and rational drug…

Computational Geometry · Computer Science 2017-12-05 Morad Behandish , Horea T. Ilies

For several decades, image restoration remains an active research topic in low-level computer vision and hence new approaches are constantly emerging. However, many recently proposed algorithms achieve state-of-the-art performance only at…

Computer Vision and Pattern Recognition · Computer Science 2015-03-26 Yunjin Chen , Wei Yu , Thomas Pock

We propose a novel polyhedral uncertainty set for robust optimization, termed the smooth uncertainty set, which captures dependencies of uncertain parameters by constraining their pairwise differences. The bounds on these differences may be…

Optimization and Control · Mathematics 2025-10-13 Noam Goldberg , Michael Poss , Shimrit Shtern

Optical scatterometry is a method to measure the size and shape of periodic micro- or nanostructures on surfaces. For this purpose the geometry parameters of the structures are obtained by reproducing experimental measurement results…

Computational Physics · Physics 2020-06-24 Philipp-Immanuel Schneider , Martin Hammerschmidt , Lin Zschiedrich , Sven Burger
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