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Purpose: A fast data-driven optimization approach, named bias-accelerated subset selection (BASS), is proposed for learning efficacious sampling patterns (SPs) with the purpose of reducing scan time in large-dimensional parallel MRI.…

Signal Processing · Electrical Eng. & Systems 2020-11-05 Marcelo V. W. Zibetti , Gabor T. Herman , Ravinder R. Regatte

Parametric shape optimization aims at minimizing an objective function f(x) where x are CAD parameters. This task is difficult when f is the output of an expensive-to-evaluate numerical simulator and the number of CAD parameters is large.…

Machine Learning · Statistics 2021-05-06 David Gaudrie , Rodolphe Le Riche , Victor Picheny , Benoit Enaux , Vincent Herbert

We study the dynamics of a seeding experiment where a fibrous scaffold material is colonized by two types of cell populations. The specific application that we have in mind is related to the idea of meniscus tissue regeneration. In order to…

The development of materials with specific structural properties is of huge practical interest, for example, for medical applications or for the development of light weight structures in aeronautics. In this article, we combine shape…

Numerical Analysis · Mathematics 2021-06-01 Helmut Harbrecht , Michael Multerer , Remo von Rickenbach

We introduce a model checking approach to diagnose the emerging of bone pathologies. The implementation of a new model of bone remodeling in PRISM has led to an interesting characterization of osteoporosis as a defective bone remodeling…

Logic in Computer Science · Computer Science 2011-11-10 Pietro Liò , Emanuela Merelli , Nicola Paoletti

In this paper, we develop two parameter-robust numerical algorithms for Biot model and applied the algorithms in brain edema simulations. By introducing an intermediate variable, we derive a multiphysics reformulation of the Biot model.…

Numerical Analysis · Mathematics 2019-06-24 Guoliang Jv , Mingchao Cai , Jingzhi Li , Jing Tian

Mechanical properties of the tissue engineering scaffolds are known to play a crucial role in tissue regeneration. Here, we have utilized discrete network and finite element models to study fibrous scaffold mechanics and its dependence on…

Soft Condensed Matter · Physics 2025-01-15 Dhruba Jyoti Mech , Mohd Suhail Rizvi

In this paper, we derive an effective macroscale description suitable to describe the growth of biological tissue within a porous tissue-engineering scaffold. As in our recent work (Holden \textit{et al.} "A multiphase multiscale model for…

Tissues and Organs · Quantitative Biology 2019-10-01 E. C. Holden , B. S. Brook , S. J. Chapman , R. D. O'Dea

Development of additive manufacturing in last decade greatly improves tissue engineering. During the manufacturing of porous scaffold, simplified but functionally equivalent models are getting focused for practically reasons. Scaffolds can…

Graphics · Computer Science 2018-12-04 Ke Liu , Ye Guo , Zeyun Yu

In recent years, there has been a growing interest in understanding complex microstructures and their effect on macroscopic properties. In general, it is difficult to derive an effective constitutive law for such microstructures with…

Computational Engineering, Finance, and Science · Computer Science 2023-10-18 Theron Guo , Ondřej Rokoš , Karen Veroy

We propose a new model-order reduction framework to poorly reducible problems arising from parametric partial differential equations with geometric variability. In such problems, the solution manifold exhibits a slowly decaying Kolmogorov…

Numerical Analysis · Mathematics 2025-10-30 Abbas Kabalan , Fabien Casenave , Felipe Bordeu , Virginie Ehrlacher , Alexandre Ern

We consider parameter estimation in a regression model corresponding to an iid sequence of censored observations of a finite state modulated renewal process. The model assumes a similar form as in Cox regression except that the baseline…

Statistics Theory · Mathematics 2007-06-13 Dorota M. Dabrowska , Wai Tung Ho

Bone remodeling is a complex process involving cell-cell interactions, biochemical signaling and mechanical stimuli. Early models of the biological aspects of remodeling were non-spatial and focused on the local dynamics at a fixed location…

Populations and Evolution · Quantitative Biology 2016-09-05 Marc D. Ryser , Kevin A. Murgas

We propose a PDE-ODE model for tissue regeneration, obtained by parabolic upscaling from kinetic transport equations written for the mesoscopic densities of mesenchymal stem cells and chondrocytes which evolve in an artificial scaffold…

Analysis of PDEs · Mathematics 2025-11-04 Shimi Chettiparambil Mohanan , Nishith Mohan , Christina Surulescu

The paper is devoted to the shape optimization of microstructures generating porous locally periodic materials saturated by viscous fluids. At the macroscopic level, the porous material is described by the Biot model defined in terms of the…

Optimization and Control · Mathematics 2018-12-03 Daniel Hübner , Eduard Rohan , Vladimír Lukeš , Michael Stingl

We propose a multiscale mechanobiological model of bone remodelling to investigate the site-specific evolution of bone volume fraction across the midshaft of a femur. The model includes hormonal regulation and biochemical coupling of bone…

Tissues and Organs · Quantitative Biology 2016-05-13 C. Lerebours , P. R. Buenzli , S. Scheiner , P. Pivonka

Bone tissue mechanical properties and trabecular microarchitecture are the main factors that determine the biomechanical properties of cancellous bone. Artificial cancellous microstructures, typically described by a reduced number of…

Medical Physics · Physics 2017-07-07 Lucas Colabella , Adrián Cisilino , Guillaume Haiat , Piotr Kowalczyk

This article combines shape optimization and homogenization techniques by looking for the optimal design of the microstructure in composite materials and of scaffolds. The development of materials with specific properties is of huge…

Optimization and Control · Mathematics 2019-07-16 Marc Dambrine , Helmut Harbrecht

A critical step in tissue engineering is the design and synthesis of 3D biocompatible matrices (scaffolds) to support and guide the proliferation of cells and tissue growth. Most existing techniques rely on the processing of scaffolds under…

Soft Condensed Matter · Physics 2020-06-16 C. S. Dias , C. A. Custodio , G. C. Antunes , M. M. Telo da Gama , J. F. Mano , N. A. M. Araujo

Understanding the dynamics of brain tumor progression is essential for optimal treatment planning. Cast in a mathematical formulation, it is typically viewed as evaluation of a system of partial differential equations, wherein the…

Quantitative Methods · Quantitative Biology 2020-01-13 Ivan Ezhov , Jana Lipkova , Suprosanna Shit , Florian Kofler , Nore Collomb , Benjamin Lemasson , Emmanuel Barbier , Bjoern Menze