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Phylogenetic trees are used to model evolution: leaves are labelled to represent contemporary species ("taxa") and interior vertices represent extinct ancestors. Informally, convex characters are measurements on the contemporary species in…
We consider a new Steiner tree problem, called vertex-cover-weighted Steiner tree problem. This problem defines the weight of a Steiner tree as the minimum weight of vertex covers in the tree, and seeks a minimum-weight Steiner tree in a…
We consider the well-studied problem of finding a spanning tree with minimum average distance between vertex pairs (called a MAD tree). This is a classic network design problem which is known to be NP-hard. While approximation algorithms…
Tree rotations (left and right) are basic local deformations allowing to transform between two unlabeled binary trees of the same size. Hence, there is a natural problem of practically finding such transformation path with low number of…
In the unsplittable flow problem on a path, we are given a capacitated path $P$ and $n$ tasks, each task having a demand, a profit, and start and end vertices. The goal is to compute a maximum profit set of tasks, such that for each edge…
We consider the task of properly PAC learning decision trees with queries. Recent work of Koch, Strassle, and Tan showed that the strictest version of this task, where the hypothesis tree $T$ is required to be optimally small, is NP-hard.…
Since 1997 there has been a steady stream of advances for the maximum disjoint paths problem. Achieving tractable results has usually required focusing on relaxations such as: (i) to allow some bounded edge congestion in solutions, (ii) to…
Given a graph G, the {\em maximum internal spanning tree problem} (MIST for short) asks for computing a spanning tree T of G such that the number of internal vertices in T is maximized. MIST has possible applications in the design of…
The early development of a zygote can be mathematically described by a developmental tree. To compare developmental trees of different species, we need to define distances on trees. If children cells after a division are not…
This paper introduces the \emph{$d$-distance matching problem}, in which we are given a bipartite graph $G=(S,T;E)$ with $S=\{s_1,\dots,s_n\}$, a weight function on the edges and an integer $d\in\mathbb Z_+$. The goal is to find a maximum…
Fast exact algorithms are known for Hamiltonian paths in undirected and directed bipartite graphs through elegant though involved algorithms that are quite different from each other. We devise algorithms that are simple and similar to each…
We study the $k$-center problem in the context of individual fairness. Let $P$ be a set of $n$ points in a metric space and $r_x$ be the distance between $x \in P$ and its $\lceil n/k \rceil$-th nearest neighbor. The problem asks to…
We study fundamental graph parameters such as the Diameter and Radius in directed graphs, when distances are measured using a somewhat unorthodox but natural measure: the distance between $u$ and $v$ is the minimum of the shortest path…
Given a metric space $(X,d_X)$, the earth mover distance between two distributions over $X$ is defined as the minimum cost of a bipartite matching between the two distributions. The doubling dimension of a metric $(X, d_X)$ is the smallest…
Self-nested trees present a systematic form of redundancy in their subtrees and thus achieve optimal compression rates by DAG compression. A method for quantifying the degree of self-similarity of plants through self-nested trees has been…
The graph edit distance is used for comparing graphs in various domains. Due to its high computational complexity it is primarily approximated. Widely-used heuristics search for an optimal assignment of vertices based on the distance…
Phylogenetically decisive collections of taxon sets have the property that if trees are chosen for each of their elements, as long as these trees are compatible, the resulting supertree is unique. This means that as long as the trees…
We initiate a systematic study of utilizing predictions to improve over approximation guarantees of classic algorithms, without increasing the running time. We propose a systematic method for a wide class of optimization problems that ask…
In the length-constrained minimum spanning tree (MST) problem, we are given an $n$-node edge-weighted graph $G$ and a length constraint $h \geq 1$. Our goal is to find a spanning tree of $G$ whose diameter is at most $h$ with minimum…
In the \emph{$k$-Diameter-Optimally Augmenting Tree Problem} we are given a tree $T$ of $n$ vertices as input. The tree is embedded in an unknown \emph{metric} space and we have unlimited access to an oracle that, given two distinct…