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Visualizing high-dimensional data is essential for understanding biomedical data and deep learning models. Neighbor embedding methods, such as t-SNE and UMAP, are widely used but can introduce misleading visual artifacts. We find that the…

Methodology · Statistics 2025-04-02 Zhexuan Liu , Rong Ma , Yiqiao Zhong

Interpretability is becoming an active research topic as machine learning (ML) models are more widely used to make critical decisions. Tabular data is one of the most commonly used modes of data in diverse applications such as healthcare…

Machine Learning · Statistics 2021-12-01 Amirata Ghorbani , Dina Berenbaum , Maor Ivgi , Yuval Dafna , James Zou

Two-dimensional embeddings obtained from dimensionality reduction techniques such as MDS, t-SNE, or UMAP, are widely used to visualize high-dimensional data and support researchers in visually identifying clusters, outliers, and other…

Machine Learning · Computer Science 2026-05-01 Pavlin G. Poličar , Blaž Zupan

Large amounts of data are available due to low-cost and high-capacity data storage equipments. We propose a data exploration/visualization method for tabular multi-dimensional, time-varying datasets to present selected items in their global…

Information Retrieval · Computer Science 2015-05-20 Nicolas Turenne

We present GraphTSNE, a novel visualization technique for graph-structured data based on t-SNE. The growing interest in graph-structured data increases the importance of gaining human insight into such datasets by means of visualization.…

Machine Learning · Computer Science 2019-04-24 Yao Yang Leow , Thomas Laurent , Xavier Bresson

Visualization methods based on the nearest neighbor graph, such as t-SNE or UMAP, are widely used for visualizing high-dimensional data. Yet, these approaches only produce meaningful results if the nearest neighbors themselves are…

Machine Learning · Computer Science 2024-06-06 Jan Niklas Böhm , Philipp Berens , Dmitry Kobak

The basic classification techniques for organizing information are thesauri, taxonomy and faceted classification. Topic map is relatively a new entrant to this information space. Topic map standard describes how complex relationships…

Digital Libraries · Computer Science 2010-03-19 Rajkumar Kannan

Neighbor embeddings are a family of methods for visualizing complex high-dimensional datasets using $k$NN graphs. To find the low-dimensional embedding, these algorithms combine an attractive force between neighboring pairs of points with a…

Machine Learning · Computer Science 2024-06-06 Jan Niklas Böhm , Philipp Berens , Dmitry Kobak

t-SNE and hierarchical clustering are popular methods of exploratory data analysis, particularly in biology. Building on recent advances in speeding up t-SNE and obtaining finer-grained structure, we combine the two to create tree-SNE, a…

Machine Learning · Computer Science 2020-02-14 Isaac Robinson , Emma Pierce-Hoffman

Document-level relation extraction is a complex human process that requires logical inference to extract relationships between named entities in text. Existing approaches use graph-based neural models with words as nodes and edges as…

Computation and Language · Computer Science 2019-09-04 Fenia Christopoulou , Makoto Miwa , Sophia Ananiadou

For users, recommendations can sometimes seem odd or counterintuitive. Visualizing recommendations can remove some of this mystery, showing how a recommendation is grouped with other choices. A drawing can also lead a user's eye to other…

Information Retrieval · Computer Science 2009-06-30 Emden Gansner , Yifan Hu , Stephen Kobourov , Chris Volinsky

Dimensionality reduction methods, also known as projections, are frequently used for exploring multidimensional data in machine learning, data science, and information visualization. Among these, t-SNE and its variants have become very…

Machine Learning · Computer Science 2019-02-22 Mateus Espadoto , Nina S. T. Hirata , Alexandru C. Telea

Low-dimensional visualizations, or "projection maps," are widely used in scientific and creative domains to interpret large-scale and complex datasets. These visualizations not only aid in understanding existing knowledge spaces but also…

Artificial Intelligence · Computer Science 2025-05-16 Xingjian Zhang , Ziyang Xiong , Shixuan Liu , Yutong Xie , Tolga Ergen , Dongsub Shim , Hua Xu , Honglak Lee , Qiaozhu Me

Previous abstractive methods apply sequence-to-sequence structures to generate summary without a module to assist the system to detect vital mentions and relationships within a document. To address this problem, we utilize semantic graph to…

Computation and Language · Computer Science 2021-09-14 Qiwei Bi , Haoyuan Li , Kun Lu , Hanfang Yang

Keyword extraction is the process of identifying the words or phrases that express the main concepts of text to the best of one's ability. Electronic infrastructure creates a considerable amount of text every day and at all times. This…

Computation and Language · Computer Science 2021-10-04 Aidin Zehtab-Salmasi , Mohammad-Reza Feizi-Derakhshi , Mohamad-Ali Balafar

Keyphrase extraction from documents is useful to a variety of applications such as information retrieval and document summarization. This paper presents an end-to-end method called DivGraphPointer for extracting a set of diversified…

Computation and Language · Computer Science 2019-05-21 Zhiqing Sun , Jian Tang , Pan Du , Zhi-Hong Deng , Jian-Yun Nie

We propose a unified view on two widely used data visualization techniques: Self-Organizing Maps (SOMs) and Stochastic Neighbor Embedding (SNE). We show that they can both be derived from a common mathematical framework. Leveraging this…

Machine Learning · Computer Science 2022-05-04 Thibaut Kulak , Anthony Fillion , François Blayo

In a real-world setting, visual recognition systems can be brought to make predictions for images belonging to previously unknown class labels. In order to make semantically meaningful predictions for such inputs, we propose a two-step…

Machine Learning · Computer Science 2017-08-29 Vincent P. A. Lonij , Ambrish Rawat , Maria-Irina Nicolae

In Geographical Information search, map visualization can challenge the user because results can consist of a large set of heterogeneous items, increasing visual complexity. We propose a novel visualization model to address this issue. Our…

Human-Computer Interaction · Computer Science 2020-04-02 Liliana Ardissono , Matteo Delsanto , Maurizio Lucenteforte , Noemi Mauro , Adriano Savoca , Daniele Scanu

Knowledge graphs are an efficient method for representing and connecting information across various concepts, useful in reasoning, question answering, and knowledge base completion tasks. They organize data by linking points, enabling…

Artificial Intelligence · Computer Science 2025-02-25 Saher Mohamed , Kirollos Farah , Abdelrahman Lotfy , Kareem Rizk , Abdelrahman Saeed , Shahenda Mohamed , Ghada Khouriba , Tamer Arafa