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In this study, we generate and maintain a database of 10 million virtual lipids through METiS's in-house de novo lipid generation algorithms and lipid virtual screening techniques. These virtual lipids serve as a corpus for pre-training,…

Computation and Language · Computer Science 2025-05-06 Tianhao Yu , Cai Yao , Zhuorui Sun , Feng Shi , Lin Zhang , Kangjie Lyu , Xuan Bai , Andong Liu , Xicheng Zhang , Jiali Zou , Wenshou Wang , Chris Lai , Kai Wang

In most natural language inference problems, sentence representation is needed for semantic retrieval tasks. In recent years, pre-trained large language models have been quite effective for computing such representations. These models…

Computation and Language · Computer Science 2023-04-26 Domagoj Ševerdija , Tomislav Prusina , Antonio Jovanović , Luka Borozan , Jurica Maltar , Domagoj Matijević

Material science literature is a rich source of factual information about various categories of entities (like materials and compositions) and various relations between these entities, such as conductivity, voltage, etc. Automatically…

Computation and Language · Computer Science 2024-01-19 Ankan Mullick , Akash Ghosh , G Sai Chaitanya , Samir Ghui , Tapas Nayak , Seung-Cheol Lee , Satadeep Bhattacharjee , Pawan Goyal

With the explosive growth of biomedical literature, designing automatic tools to extract information from the literature has great significance in biomedical research. Recently, transformer-based BERT models adapted to the biomedical domain…

Computation and Language · Computer Science 2020-11-03 Peng Su , K. Vijay-Shanker

Negation is an important characteristic of language, and a major component of information extraction from text. This subtask is of considerable importance to the biomedical domain. Over the years, multiple approaches have been explored to…

Computation and Language · Computer Science 2020-05-26 Aditya Khandelwal , Suraj Sawant

Pre-trained language models have attracted increasing attention in the biomedical domain, inspired by their great success in the general natural language domain. Among the two main branches of pre-trained language models in the general…

Computation and Language · Computer Science 2023-04-04 Renqian Luo , Liai Sun , Yingce Xia , Tao Qin , Sheng Zhang , Hoifung Poon , Tie-Yan Liu

Machine learning has revolutionized materials design, yet predicting complex properties like alloy ductility remains challenging due to the influence of processing conditions and microstructural features that resist quantification through…

Materials Science · Physics 2025-06-17 Yongqian Peng , Zhouran Zhang , Longhui Zhang , Fengyuan Zhao , Yahao Li , Yicong Ye , Shuxin Bai

Our world is constantly evolving, and so is the content on the web. Consequently, our languages, often said to mirror the world, are dynamic in nature. However, most current contextual language models are static and cannot adapt to changes…

Computation and Language · Computer Science 2022-01-26 Guy D. Rosin , Ido Guy , Kira Radinsky

BERT is inefficient for sentence-pair tasks such as clustering or semantic search as it needs to evaluate combinatorially many sentence pairs which is very time-consuming. Sentence BERT (SBERT) attempted to solve this challenge by learning…

Computation and Language · Computer Science 2021-02-08 Yan Zhang , Ruidan He , Zuozhu Liu , Kwan Hui Lim , Lidong Bing

Pre-trained contextualized embedding models such as BERT are a standard building block in many natural language processing systems. We demonstrate that the sentence-level representations produced by some off-the-shelf contextualized…

Computation and Language · Computer Science 2022-06-06 Xiliang Zhu , David Rossouw , Shayna Gardiner , Simon Corston-Oliver

In Natural Language Processing (NLP), Machine Reading Comprehension (MRC) is the task of answering a question based on a given context. To handle questions in the medical domain, modern language models such as BioBERT, SciBERT and even…

Computation and Language · Computer Science 2024-12-16 Saptarshi Sengupta , Connor Heaton , Suhan Cui , Soumalya Sarkar , Prasenjit Mitra

This study presents German FinBERT, a novel pre-trained German language model tailored for financial textual data. The model is trained through a comprehensive pre-training process, leveraging a substantial corpus comprising financial…

Computation and Language · Computer Science 2023-11-16 Moritz Scherrmann

Recent years have witnessed a substantial increase in the use of deep learning to solve various natural language processing (NLP) problems. Early deep learning models were constrained by their sequential or unidirectional nature, such that…

Information Retrieval · Computer Science 2024-03-05 Jiajia Wang , Jimmy X. Huang , Xinhui Tu , Junmei Wang , Angela J. Huang , Md Tahmid Rahman Laskar , Amran Bhuiyan

This paper focuses on learning domain-oriented language models driven by end tasks, which aims to combine the worlds of both general-purpose language models (such as ELMo and BERT) and domain-specific language understanding. We propose…

Computation and Language · Computer Science 2020-04-30 Hu Xu , Bing Liu , Lei Shu , Philip S. Yu

Knowledge-enhanced pre-trained models for language representation have been shown to be more effective in knowledge base construction tasks (i.e.,~relation extraction) than language models such as BERT. These knowledge-enhanced language…

Computation and Language · Computer Science 2022-10-25 Jiacheng Li , Yannis Katsis , Tyler Baldwin , Ho-Cheol Kim , Andrew Bartko , Julian McAuley , Chun-Nan Hsu

In this paper, we introduce a new vision-language pre-trained model -- ImageBERT -- for image-text joint embedding. Our model is a Transformer-based model, which takes different modalities as input and models the relationship between them.…

Computer Vision and Pattern Recognition · Computer Science 2020-01-24 Di Qi , Lin Su , Jia Song , Edward Cui , Taroon Bharti , Arun Sacheti

Large, self-supervised transformer-based language representation models have recently received significant amounts of attention, and have produced state-of-the-art results across a variety of tasks simply by scaling up pre-training on…

Computation and Language · Computer Science 2019-10-25 Alexandre Matton , Luke de Oliveira

We introduce AnnualBERT, a series of language models designed specifically to capture the temporal evolution of scientific text. Deviating from the prevailing paradigms of subword tokenizations and "one model to rule them all", AnnualBERT…

Computation and Language · Computer Science 2025-05-19 Junjie Dong , Zhuoqi Lyu , Qing Ke

Machine based text comprehension has always been a significant research field in natural language processing. Once a full understanding of the text context and semantics is achieved, a deep learning model can be trained to solve a large…

Computation and Language · Computer Science 2020-09-03 Omar Mossad , Amgad Ahmed , Anandharaju Raju , Hari Karthikeyan , Zayed Ahmed

Despite the effectiveness of utilizing the BERT model for document ranking, the high computational cost of such approaches limits their uses. To this end, this paper first empirically investigates the effectiveness of two knowledge…

Information Retrieval · Computer Science 2023-05-05 Xuanang Chen , Ben He , Kai Hui , Le Sun , Yingfei Sun
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