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Computational modeling is crucial for understanding and analyzing complex systems. In biology, model creation is a human dependent task that requires reading hundreds of papers and conducting wet lab experiments, which would take days or…
Discovering authoritative links between publications and the datasets that they use can be a labor-intensive process. We introduce a natural language processing pipeline that retrieves and reviews publications for informal references to…
In recent years, with the rapid development of information on the Internet, the number of complex texts and documents has increased exponentially, which requires a deeper understanding of deep learning methods in order to accurately…
Large language models (LLMs) typically enhance their performance through either the retrieval of semantically similar information or the improvement of their reasoning capabilities. However, a significant challenge remains in effectively…
Using different sources of information to support automated extracting of relations between biomedical concepts contributes to the development of our understanding of biological systems. The primary comprehensive source of these relations…
This research work deals with Natural Language Processing (NLP) and extraction of essential information in an explicit form. The most common among the information management strategies is Document Retrieval (DR) and Information Filtering.…
Knowledge distillation is an effective technique that transfers knowledge from a large teacher model to a shallow student. However, just like massive classification, large scale knowledge distillation also imposes heavy computational costs…
An overwhelmingly large amount of knowledge in the materials domain is generated and stored as text published in peer-reviewed scientific literature. Recent developments in natural language processing, such as bidirectional encoder…
Since the advent of various pre-trained large language models, extracting structured knowledge from scientific text has experienced a revolutionary change compared with traditional machine learning or natural language processing techniques.…
Over the last century, we observe a steady and exponentially growth of scientific publications globally. The overwhelming amount of available literature makes a holistic analysis of the research within a field and between fields based on…
In this paper, we present an efficient deep learning based approach to extract technology-related topics and keywords within scientific literature, and identify corresponding technologies within patent applications. Specifically, we utilize…
A crucial component in the curation of KB for a scientific domain (e.g., materials science, foods & nutrition, fuels) is information extraction from tables in the domain's published research articles. To facilitate research in this…
The increase in the number of researchers coupled with the ease of publishing and distribution of scientific papers (due to technological advancements) has resulted in a dramatic increase in astronomy literature. This has likely led to the…
Biomedical literature is a rapidly expanding field of science and technology. Classification of biomedical texts is an essential part of biomedicine research, especially in the field of biology. This work proposes the fine-tuned DistilBERT,…
With the large volume of unstructured data that increases constantly on the web, the motivation of representing the knowledge in this data in the machine-understandable form is increased. Ontology is one of the major cornerstones of…
The relentless expansion of scientific literature presents significant challenges for navigation and knowledge discovery. Within Research Information Retrieval, established tasks such as text summarization and classification remain crucial…
In an era of exponential scientific growth, identifying novel research ideas is crucial and challenging in academia. Despite potential, the lack of an appropriate benchmark dataset hinders the research of novelty detection. More…
Keeping up with the research literature plays an important role in the workflow of scientists - allowing them to understand a field, formulate the problems they focus on, and develop the solutions that they contribute, which in turn shape…
Previous studies in Open Information Extraction (Open IE) are mainly based on extraction patterns. They manually define patterns or automatically learn them from a large corpus. However, these approaches are limited when grasping the…
Non-textual components such as charts, diagrams and tables provide key information in many scientific documents, but the lack of large labeled datasets has impeded the development of data-driven methods for scientific figure extraction. In…