Related papers: Knot Dynamics
It is widely accepted that the complex dynamics characteristic of recurrent neural circuits contributes in a fundamental manner to brain function. Progress has been slow in understanding and exploiting the computational power of recurrent…
Knots and links are fascinating and intricate topological objects. Their influence spans from DNA and molecular chemistry to vortices in superfluid helium, defects in liquid crystals and cosmic strings in the early universe. Here, we find…
This paper discusses some geometric ideas associated with knots in real projective 3-space $\mathbb{R}P^3$. These ideas are borrowed from classical knot theory. Since knots in $\mathbb{R}P^3$ are classified into three disjoint classes, -…
We introduce and begin the study of new knot energies defined on knot diagrams. Physically, they model the internal energy of thin metallic solid tori squeezed between two parallel planes. Thus the knots considered can perform the second…
We analyze rigorously the dynamics of the entanglement between two qubits which interact only through collective and local environments. Our approach is based on the resonance perturbation theory which assumes a small interaction between…
Quantum mechanics is a successful theory that describes the behavior of photons, electrons, and other atomic- and molecular-scale objects. However, it is far from being well understood. In this paper, a new theory - knot physics for…
Knot theory is the Mathematical study of knots. In this paper we have studied the Composition of two knots. Knot theory belongs to Mathematical field of Topology, where the topological concepts such as topological spaces, homeomorphisms,…
A computer model is described which is used to assess the dynamical complexity of a class of networks of spiking neurons with small-world properties. Networks are constructed by forming an initially segregated set of highly intra-connected…
The presence of slipknots in configurations of proteins and DNA has been shown to affect their functionality, or alter it entirely. Historically, polymers are modeled as polygonal chains in space. As an alternative to space curves, we…
In the paper we present results to develop an irreducible theory of complex systems in terms of self-organization processes of prime integer relations. Based on the integers and controlled by arithmetic only the self-organization processes…
Motivated by the idea of using simple macroscopic examples to illustrate the physics of complex systems, we modify a historic experimental setup in which interacting floating magnets spontaneously self-assemble into ordered clusters. By…
We point out the connection between mathematical knot theory and spin glass/search problem. In particular, we present a statistical mechanical formulation of the problem of computing a knot invariant; p-colorability problem, which provides…
We consider countable linear orders and study the quasi-order of convex embeddability and its induced equivalence relation. We obtain both combinatorial and descriptive set-theoretic results, and further extend our research to the case of…
Kinematics and dynamics of a particle moving on a torus knot poses an interesting problem as a constrained system. In the first part of the paper we have derived the modified symplectic structure or Dirac brackets of the above model in…
In this work, we consider two spins initially prepared in a product of coherent states and study their entanglement dynamics due to a general interacting Hamiltonian. We adopt an approach that allowed the derivation of a semiclassical…
DNA unzipping by nanopore translocation has implications in diverse contexts, from polymer physics to single-molecule manipulation to DNA-enzyme interactions in biological systems. Here we use molecular dynamics simulations and a…
A knot is an an embedding of a circle into three-dimensional space. We say that a knot is unknotted if there is an ambient isotopy of the embedding to a standard circle. By representing knots via planar diagrams, we discuss the problem of…
Over the years, advances in experimental and computational methods have helped us to understand the role of thermodynamic, kinetic and active (chaperone-aided) effects in coordinating the folding steps required to achieving a knotted native…
In Classical Knot Theory and in the new Theory of Quantum Invariants substantial effort was directed toward the search for unknotting moves on links. We solve, in this note, several classical problems concerning unknotting moves. Our…
This paper explores the interactions between knot theory and quantum computing. On one side, knot theory has been used to create models of quantum computing, and on the other, it is a source of computational problems. Knot theory is often…