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A coarse-grained computational procedure based on the Finite Element Method is proposed to calculate the normal modes and mechanical response of proteins and their supramolecular assemblies. Motivated by the elastic network model, proteins…

Biomolecules · Quantitative Biology 2007-05-23 Mark Bathe

Refinement is a critical step in supply-driven conceptual design of multidimensional cubes because it can hardly be automated. In fact, it includes steps such as the labeling of attributes as descriptive and the removal of uninteresting…

Databases · Computer Science 2025-02-05 Stefano Rizzi

Significant work has been done on learning regular expressions from a set of data values. Depending on the domain, this approach can be very successful. However, significant time is required to learn these expressions and the resulting…

Databases · Computer Science 2024-03-18 Michael J. Mior

The weighted Euler characteristic transform (WECT) is a new tool for extracting shape information from data equipped with a weight function. Image data may benefit from the WECT where the intensity of the pixels are used to define the…

Computational Geometry · Computer Science 2023-07-27 Jessi Cisewski-Kehe , Brittany Terese Fasy , Dhanush Giriyan , Eli Quist

We propose a performance evaluation method for security protocols. Based on the informal specification, we construct a canonical model which includes, alongside protocol messages, cryptographic operations performed by participants in the…

Cryptography and Security · Computer Science 2009-08-21 Bela Genge , Piroska Haller , Iosif Ignat , Ovidiu Ratoi

Researchers got success in mining the Web usage data effectively and efficiently. But representation of the mined patterns is often not in a form suitable for direct human consumption. Hence mechanisms and tools that can represent mined…

Human-Computer Interaction · Computer Science 2009-09-01 Ratnesh Kumar Jain , Dr. Suresh Jain , Dr. R. S. Kasana

Comprehensive specifications are essential for various activities across the entire validation continuum for system-on-chip (SoC) designs. However, specifications are often ambiguous, incomplete, or even contain inconsistencies or errors.…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-05-05 Yuting Cao , Parijat Mukherjee , Mahesh Ketkar , Jin Yang , Hao Zheng

Atomic-level modeling performed at large scales enables the investigation of mesoscale materials properties with atom-by-atom resolution. The spatial complexity of such cross-scale simulations renders them unsuitable for simple human visual…

Materials Science · Physics 2022-04-05 Heejung Chung , Rodrigo Freitas , Gowoon Cheon , Evan J. Reed

We introduce a novel approach to automatically synthesize a mathematical representation of the control algorithms implemented in industrial cyber-physical systems (CPS), given the embedded system binary. The output model can be used by…

Graphs and graph transformation systems are a frequently used modelling technique for a wide range of different domains, cover- ing areas as diverse as refactorings, network topologies or reconfigurable software. Being a formal method,…

Programming Languages · Computer Science 2015-03-17 Dominik Steenken , Heike Wehrheim , Daniel Wonisch

A new behavior descriptive entity type called spec is proposed, which combines the traditional interface with test rules and test cases, to completely specify the desired behavior of each method, and to enforce the behavior-wise correctness…

Programming Languages · Computer Science 2014-08-21 Chengpu Wang

Mass spectrometry (MS) is an important technique for chemical profiling which calculates for a sample a high dimensional histogram-like spectrum. A crucial step of MS data processing is the peak picking which selects peaks containing…

Machine Learning · Statistics 2009-10-05 Theodore Alexandrov , Klaus Steinhorst , Oliver Keszoecze , Stefan Schiffler

We cast shape matching as metric learning with convolutional networks. We break the end-to-end process of image representation into two parts. Firstly, well established efficient methods are chosen to turn the images into edge maps.…

Computer Vision and Pattern Recognition · Computer Science 2018-07-27 Filip Radenović , Giorgos Tolias , Ondřej Chum

Assuring the correct behavior of cyber-physical systems requires significant modeling effort, particularly during early stages of the engineering and design process when a system is not yet available for testing or verification of proper…

Systems and Control · Electrical Eng. & Systems 2021-01-27 Georgios Bakirtzis , Christina Vasilakopoulou , Cody H. Fleming

We present a method for generating colored 3D shapes from natural language. To this end, we first learn joint embeddings of freeform text descriptions and colored 3D shapes. Our model combines and extends learning by association and metric…

Computer Vision and Pattern Recognition · Computer Science 2018-03-23 Kevin Chen , Christopher B. Choy , Manolis Savva , Angel X. Chang , Thomas Funkhouser , Silvio Savarese

Session types capture precise protocol structure in concurrent programming, but do not specify properties of the exchanged values beyond their basic type. Refinement types are a form of dependent types that can address this limitation,…

Logic in Computer Science · Computer Science 2012-11-20 Pedro Baltazar , Dimitris Mostrous , Vasco T. Vasconcelos

Universal information extraction (UIE) primarily employs an extractive generation approach with large language models (LLMs), typically outputting structured information based on predefined schemas such as JSON or tables. UIE suffers from a…

Computation and Language · Computer Science 2025-06-03 Sheng Liang , Yongyue Zhang , Yaxiong Wu , Ruiming Tang , Yong Liu

The contribution of this paper is to provide a semantic model (using soft constraints) of the words used by web-users to describe objects in a language game; a game in which one user describes a selected object of those composing the scene,…

Computation and Language · Computer Science 2010-05-31 Sergio Guadarrama , David P. Pancho

Deep functional maps, leveraging learned feature extractors and spectral correspondence solvers, are fundamental to non-rigid 3D shape matching. Based on an analysis of open-source implementations, we find that standard functional map…

Computer Vision and Pattern Recognition · Computer Science 2026-04-14 Yizheng Xie , Lennart Bastian , Congyue Deng , Thomas W. Mitchel , Maolin Gao , Daniel Cremers

SHAP (SHapley Additive exPlanations) values are a widely used method for local feature attribution in interpretable and explainable AI. We propose an efficient two-stage algorithm for computing SHAP values in both black-box setting and…

Machine Learning · Computer Science 2025-10-24 Ali Gorji , Andisheh Amrollahi , Andreas Krause
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