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Understanding the dynamic processes of the glassy system continues to be challenging. Recent advances have shown the power of graph neural networks (GNNs) for determining the correlation between structure and dynamics in the glassy system.…

Disordered Systems and Neural Networks · Physics 2023-10-18 Xiao Jiang , Zean Tian , Kenli Li

Graph contrastive learning (GCL), learning the node representation by contrasting two augmented graphs in a self-supervised way, has attracted considerable attention. GCL is usually believed to learn the invariant representation. However,…

Machine Learning · Computer Science 2024-03-08 Yanhu Mo , Xiao Wang , Shaohua Fan , Chuan Shi

Graph contrastive learning (GCL), as an emerging self-supervised learning technique on graphs, aims to learn representations via instance discrimination. Its performance heavily relies on graph augmentation to reflect invariant patterns…

Machine Learning · Computer Science 2023-06-22 Lu Lin , Jinghui Chen , Hongning Wang

Graph Contrastive Learning (GCL) has emerged as the foremost approach for self-supervised learning on graph-structured data. GCL reduces reliance on labeled data by learning robust representations from various augmented views. However,…

Machine Learning · Computer Science 2025-02-20 Ruyue Liu , Rong Yin , Yong Liu , Xiaoshuai Hao , Haichao Shi , Can Ma , Weiping Wang

Attributed graph clustering holds significant importance in modern data analysis. However, due to the complexity of graph data and the heterogeneity of node attributes, leveraging graph information for clustering remains challenging. To…

Machine Learning · Computer Science 2025-08-01 Binxiong Li , Xu Xiang , Xue Li , Quanzhou Lou , Binyu Zhao , Yujie Liu , Huijie Tang , Benhan Yang

Link prediction is a fundamental problem in many graph based applications, such as protein-protein interaction prediction. Graph neural network (GNN) has recently been widely used for link prediction. However, existing GNN based link…

Machine Learning · Computer Science 2023-03-02 Kai-Lang Yao , Wu-Jun Li

Convolutional neural networks (CNNs) have achieved great success on grid-like data such as images, but face tremendous challenges in learning from more generic data such as graphs. In CNNs, the trainable local filters enable the automatic…

Machine Learning · Computer Science 2018-09-05 Hongyang Gao , Zhengyang Wang , Shuiwang Ji

Subgraph representation learning based on Graph Neural Network (GNN) has exhibited broad applications in scientific advancements, such as predictions of molecular structure-property relationships and collective cellular function. In…

Machine Learning · Computer Science 2022-10-17 Yili Shen , Xiao Liu , Cheng-Wei Ju , Jiaxu Yan , Jun Yi , Zhou Lin , Hui Guan

Graph augmentations are essential for graph contrastive learning. Most existing works use pre-defined random augmentations, which are usually unable to adapt to different input graphs and fail to consider the impact of different nodes and…

Machine Learning · Computer Science 2023-03-28 Yifu Chen , Qianqian Ren , Liu Yong

Contrastive Learning (CL) has emerged as a dominant technique for unsupervised representation learning which embeds augmented versions of the anchor close to each other (positive samples) and pushes the embeddings of other samples…

Artificial Intelligence · Computer Science 2022-06-15 Jun Xia , Lirong Wu , Ge Wang , Jintao Chen , Stan Z. Li

Graph Contrastive Learning (GCL) has recently emerged as a promising graph self-supervised learning framework for learning discriminative node representations without labels. The widely adopted objective function of GCL benefits from two…

Machine Learning · Computer Science 2024-11-05 Yunhui Liu , Tieke He , Tao Zheng , Jianhua Zhao

Predicting events such as political protests, flu epidemics, and criminal activities is crucial to proactively taking necessary measures and implementing required responses to address emerging challenges. Capturing contextual information…

Social and Information Networks · Computer Science 2024-04-25 Muhammed Ifte Khairul Islam , Khaled Mohammed Saifuddin , Tanvir Hossain , Esra Akbas

Graph neural networks (GNNs) have emerged as powerful tools for learning protein structures by capturing spatial relationships at the residue level. However, existing GNN-based methods often face challenges in learning multiscale…

Machine Learning · Computer Science 2026-02-03 Shih-Hsin Wang , Yuhao Huang , Taos Transue , Justin Baker , Jonathan Forstater , Thomas Strohmer , Bao Wang

Motivation: Despite its great success in various physical modeling, differential geometry (DG) has rarely been devised as a versatile tool for analyzing large, diverse and complex molecular and biomolecular datasets due to the limited…

Quantitative Methods · Quantitative Biology 2018-06-12 Duc Duy Nguyen , Guo-Wei Wei

Graph neural networks (GNNs) have emerged as powerful tools to accurately predict materials and molecular properties in computational discovery pipelines. In this article, we exploit the invertible nature of these neural networks to…

Machine Learning · Computer Science 2024-06-06 Félix Therrien , Edward H. Sargent , Oleksandr Voznyy

In recent years, deep learning on graphs has achieved remarkable success in various domains. However, the reliance on annotated graph data remains a significant bottleneck due to its prohibitive cost and time-intensive nature. To address…

Property prediction plays an important role in material discovery. As an initial step to eventually develop a foundation model for material science, we introduce a new autoencoder called the MHG-GNN, which combines graph neural network…

Graph Contrastive Learning (GCL) has shown promising performance in graph representation learning (GRL) without the supervision of manual annotations. GCL can generate graph-level embeddings by maximizing the Mutual Information (MI) between…

Machine Learning · Computer Science 2022-05-25 Jiawei Sun , Ruoxin Chen , Jie Li , Chentao Wu , Yue Ding , Junchi Yan

Spatial correlations between different ground objects are an important feature of mining land cover research. Graph Convolutional Networks (GCNs) can effectively capture such spatial feature representations and have demonstrated promising…

Computer Vision and Pattern Recognition · Computer Science 2024-04-02 Renxiang Guan , Zihao Li , Chujia Song , Guo Yu , Xianju Li , Ruyi Feng

Atomistic materials modeling is a critical task with wide-ranging applications, from drug discovery to materials science, where accurate predictions of the target material property can lead to significant advancements in scientific…