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Using the correction terms in Heegaard Floer homology, we prove that if a knot in $S^3$ admits a positive integral $\mathbf{T}$-, $\mathbf{O}$- or $\mathbf{I}$-type surgery, it must have the same knot Floer homology as one of the knots…

We construct cobordism maps for the \textit{minus} version of instanton knot homology associated to a \textit{specially decorated} knot cobordisms of arbitrary genus between two null-homologous knots in closed oriented $3$-manifolds. As an…

We prove the Doran-Harder-Thompson conjecture in the case of elliptic curves by using ideas from SYZ mirror symmetry. The conjecture claims that when a Calabi-Yau manifold $X$ degenerates to a union of two quasi-Fano manifolds (Tyurin…

We define a Floer-homology invariant for knots in an oriented three-manifold, closely related to the holomorphic disk Floer homologies for three-manifolds defined in an earlier paper. We set up basic properties of these invariants,…

We review the construction of Heegaard Floer homology for closed three-manifolds and also for knots and links in the three-sphere. We also discuss three applications of this invariant to knot theory: studying the Thurston norm of a link…

We examine surgery on a knot in $S^3$ to determine surgery obstructions to Seifert fibered integral homology spheres. We find such surgery obstructions using Heegaard Floer, Knot Floer homology and the mapping cone formula for computing…

We give inequalities for the Manolescu invariants $\alpha,\beta,\gamma$ under the connected sum operation. We compute the Manolescu invariants of connected sums of some Seifert fiber spaces. Using these same invariants, we provide a proof…

We give combinatorial descriptions of the Heegaard Floer homology groups for arbitrary three-manifolds (with coefficients in Z/2). The descriptions are based on presenting the three-manifold as an integer surgery on a link in the…

We construct a filtered mapping cone formula that computes the knot Floer complex of the $(n,1)$--cable of the knot meridian in any rational surgery, generalizing Truong's result about the $(n,1)$--cable of the knot meridian in large…

There is one generalization of fibered links in 3-manifolds, called homologically fibered links. It is known that the existence of homologically fibered links whose fiber surface has a given homeomorphic type is determined by the first…

A consequence of the Cabling Conjecture of Gonzalez-Acu\~{n}a and Short is that Dehn surgery on a knot in $S^3$ cannot produce a manifold with more than two connected summands. In the event that some Dehn surgery produces a manifold with…

Three-manifolds can be obtained through surgery of framed links in $S^3$. We study the meaning of surgery procedures in the context of topological strings. We obtain U(N) three-manifold invariants from U(N) framed link invariants in…

We prove that if positive integer p-surgery along a knot K \subset S^3 produces an L-space and it bounds a sharp 4-manifold, then the knot genus obeys the bound 2g(K) -1 \leq p - \sqrt{3p+1}. Moreover, there exists an infinite family of…

Ozsv\'ath and Szab\'o conjectured that knot Floer homology detects fibred knots in $S^3$. We will prove this conjecture for null-homologous knots in arbitrary closed 3--manifolds. Namely, if $K$ is a knot in a closed 3--manifold $Y$, $Y-K$…

In a previous paper we have constructed an invariant of four-dimensional manifolds with boundary in the form of an element in the stable homotopy group of the Seiberg-Witten Floer spectrum of the boundary. Here we prove that when one glues…

Let $n \geq 2$. We prove a homological stability theorem for the diffeomorphism groups of $(4n+1)$-dimensional manifolds, with respect to forming the connected sum with $(2n-1)$-connected, $(4n+1)$-dimensional manifolds that are stably…

We compute the Heegaard Floer homology of any rational homology 3-sphere with an open book decomposition of the form (T,\phi), where T is a genus one surface with one boundary component. In addition, we compute the Heegaard Floer homology…

An irreducible 3--manifold with torus boundary either is a Seifert fibered space or admits at most three lens space fillings according to the Cyclic Surgery Theorem. We examine the sharpness of this theorem by classifying the non-hyperbolic…

This work continues the study of a homotopy-theoretic construction of the author inspired by the Bott-Taubes integrals. Bott and Taubes constructed knot invariants by integrating differential forms along the fiber of a bundle over the space…

Using the theory of perverse sheaves of vanishing cycles, we define a homological invariant of knots in three-manifolds, similar to the three-manifold invariant constructed by Abouzaid and the second author. We use spaces of SL(2,C) flat…