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We give a partial characterization of bordered Floer homology in terms of sutured Floer homology. The bordered algebra and modules are direct sums of certain sutured Floer complexes. The algebra multiplication and algebra action correspond…

In the bordered Floer theory, gluing thickened torus of positive meridional Dehn twist to the boundary of a knot complement result in the knot complement of increased framing. For a fixed knot K, we construct a direct system of positively…

By recent results of Baker--Etnyre--Van Horn-Morris, a rational open book decomposition defines a compatible contact structure. We show that the Heegaard Floer contact invariant of such a contact structure can be computed in terms of the…

We define sutured Heegaard diagrams for null-homologous knots in 3-manifolds. These diagrams are useful for computing the knot Floer homology at the top filtration level. As an application, we give a formula for the knot Floer homology of a…

Let $K$ be a rationally null-homologous knot in a three-manifold $Y$. We construct a version of knot Floer homology in this context, including a description of the Floer homology of a three-manifold obtained as Morse surgery on the knot…

We consider a homology sphere $M_n(K_1,K_2)$ presented by two knots $K_1,K_2$ with linking number 1 and framing $(0,n)$. We call the manifold {\it Matsumoto's manifold}. We show that there exists no contractible bound of $M_n(T_{2,3},K_2)$…

We survey Ozsv\'ath-Szab\'o's bordered approach to knot Floer homology. After a quick introduction to knot Floer homology, we introduce the relevant algebraic concepts ($\mathcal{A}_\infty$-modules, type $D$-structures, box tensor, etc.),…

We define a sutured cobordism category of surfaces with boundary and 3-manifolds with corners. In this category a sutured 3-manifold is regarded as a morphism from the empty surface to itself. In the process we define a new class of…

We show that bordered Heegaard Floer homology detects incompressible surfaces and bordered-sutured Floer homology detects partly boundary parallel tangles and bridges, in natural ways. For example, there is a bimodule Lambda so that the…

$\rm SL(2,\mathbb{C})$ Chern-Simons theory on a closed 3-manifold is one of the most interesting, yet tractable examples of a QFT. On one hand, its non-perturbative structure is not yet fully understood; on the other, the mathematical…

We study the form of the Turaev-Viro partition function Z(M) for different 3-manifolds with boundary. We show that for $S^2$ boundaries Z(M) factorizes into a term which contains the boundary dependence and another which depends only on the…

For closed 3-manifolds, Heegaard Floer homology is related to the Thurston norm through results due to Ozsv\'ath and Szab\'o, Ni, and Hedden. For example, given a closed 3-manifold Y, there is a bijection between vertices of the HF^+(Y)…

We develop a calculus of surgery data, called bridged links, which involves besides links also pairs of balls that describe one-handle attachements. As opposed to the usual link calculi of Kirby and others this description uses only…

Bordered Heegaard Floer homology is an invariant for three-manifolds with boundary. In particular, this invariant associates to a handle decomposition of a surface F a differential graded algebra, and to an arc slide between two handle…

We provide a systematic treatment of boundaries based on subgroups $K\subseteq G$ with the Kitaev quantum double $D(G)$ model in the bulk. The boundary sites are representations of a $*$-subalgebra $\Xi\subseteq D(G)$ and we explicate its…

We provide a new obstruction for a rational homology 3-sphere to arise by Dehn surgery on a given knot in the 3-sphere. The obstruction takes the form of an inequality involving the genus of the knot, the surgery coefficient, and a count of…

In previous works, the author described an associative algebra whose $A_\infty$-module categories encode the Heegaard Floer Dehn surgery formulas. In this article, we describe the Koszul dual of this algebra. We construct dualizing…

We give an explicit construction of the Honda--Kazez--Mati\'c gluing maps in terms of contact handles. We use this to prove a duality result for turning a sutured manifold cobordism around, and to compute the trace in the sutured Floer…

Let $\widehat{\mathcal{C}}_\mathbb{Z}$ be the group consists of manifold-knot pairs $(Y,K)$ modulo homology concordance, where $Y$ is an integer homology sphere bounding an integer homology ball, and let $\mathcal{C}_\mathbb{Z}$ be the…

We define a "sutured topological quantum field theory", motivated by the study of sutured Floer homology of product 3-manifolds, and contact elements. We study a rich algebraic structure of suture elements in sutured TQFT, showing that it…