English
Related papers

Related papers: Weak correlation between fluctuations in protein d…

200 papers

Conformational fluctuations are believed to play an important role in the process by which transcription factor proteins locate and bind their target site on the genome of a bacterium. Using a simple model, we show that the binding time can…

Soft Condensed Matter · Physics 2008-07-22 Longhua Hu , Alexander Y. Grosberg , Robijn Bruinsma

We study low--temperature non Gaussian thermal fluctuations of a system of classical particles around a (hypothetical) crystalline ground state. These thermal fluctuations are described by the behaviour of a system of long range interacting…

Condensed Matter · Physics 2007-05-23 Sergio Albeverio , Roman Gielerak , Helge Holden , Torbjørn Kolsrud , Mohammed Mebkhout

Temperature sensing is a ubiquitous cell behavior, but the fundamental limits to the precision of temperature sensing are poorly understood. Unlike in chemical concentration sensing, the precision of temperature sensing is not limited by…

Biological Physics · Physics 2021-09-01 Michael Vennettilli , Soutick Saha , Ushasi Roy , Andrew Mugler

Spectra of thermal fluctuations of a wide range of interfaces, from liquid/air, viscoelastic material/air, liquid/liquid, to liquid/viscoelastic material interfaces, were measured over 100 Hz to 10 MHz frequency range. The obtained spectra…

Soft Condensed Matter · Physics 2017-05-31 Kenichiro Aoki , Takahisa Mitsui

The non-equilibrium fluctuations of power flux in a fluidized granular media have been recently measured in an experiment [Phys. Rev. Lett. 92, 164301, 2004], which was announced to be a verification of the Fluctuation Relation (FR) by…

Statistical Mechanics · Physics 2007-05-23 A. Puglisi , P. Visco , A. Barrat , E. Trizac , F. van Wijland

In the context of the dynamical evolution in a non-stationary thermal bath, we construct a family of fluctuation relations for the entropy production that are not verified by the work performed on the system. We exhibit fluctuation…

Statistical Mechanics · Physics 2013-05-29 Raphael Chetrite

A rewiew of the development of formalism to describe correlations and fluctuations in multiparticle production is presented. The milestones of history of this development and some obvious sources of correlations in experimental data are…

High Energy Physics - Phenomenology · Physics 2007-05-23 K. Fialkowski

We analyze the non-equilibrium shape fluctuations of giant unilamellar vesicles encapsulating motile bacteria. Owing to bacteria--membrane collisions, we experimentally observe a significant increase in the magnitude of membrane…

Soft Condensed Matter · Physics 2020-04-22 Sho C. Takatori , Amaresh Sahu

The fundamental insight into Brownian motion by Einstein is that all substances exhibit continual fluctuations due to thermal agitation balancing with the frictional resistance. However, even at thermal equilibrium, biological activity can…

Soft Condensed Matter · Physics 2014-02-19 Soya Shinkai , Yuichi Togashi

We show that the biomolecular exciton dynamics under the influence of slow polarization fluctuations in the solvent cannot be described by approaches which are perturbative in the system-bath coupling. For this, we compare results for the…

Soft Condensed Matter · Physics 2009-12-01 P. Nalbach , M. Thorwart

Even in the absence of externally applied temperature gradients, spontaneously generated temperature fluctuations arise in turbulent flows. We experimentally study these fluctuations in a closed von Karman swirling flow of air at Mach…

Fluid Dynamics · Physics 2023-01-31 Gaurav Prabhudesai , Stephane Perrard , Francois Petrelis , Stephan Fauve

We present a short review of traces of nonextensivity in particle physics due to fluctuations.

High Energy Physics - Phenomenology · Physics 2017-08-23 G. Wilk , Z. Wlodarczyk

Thermal fluctuations provide the main source of large scale density perturbations in warm inflationary models of the early universe. For the first time, general results are obtained for the power spectrum in the case when the friction…

Cosmology and Nongalactic Astrophysics · Physics 2010-04-28 Chris Graham , Ian G Moss

The spectrum and scale of fluctuations in protein structures affect the range of cell phenomena, including stability of protein structures or their fragments, allosteric transitions and energy transfer. The study presents a…

Biomolecules · Quantitative Biology 2015-05-13 Anatoly M. Ruvinsky , Ilya A. Vakser

Self-organization of proteins in space and time is of crucial importance for the functioning of cellular processes. Often, this organization takes place in the presence of strong random fluctuations due to the small number of molecules…

Subcellular Processes · Quantitative Biology 2010-09-22 Elisabeth Fischer-Friedrich , Giovanni Meacci , Joe Lutkenhaus , Hugues Chate , Karsten Kruse

We examine the effects of thermal fluctuations on thin elastic filaments with non-circular cross-section and arbitrary spontaneous curvature and torsion. Analytical expressions for orientational correlation functions and for the persistence…

Soft Condensed Matter · Physics 2009-10-31 S. Panyukov , Y. Rabin

Thermal conduction is an important energy transfer and damping mechanism in astrophysical flows. Fourier's law - the heat flux is proportional to the negative temperature gradient, leading to temperature diffusion - is a well-known…

Solar and Stellar Astrophysics · Physics 2015-06-23 Daniel Lecoanet , Benjamin P. Brown , Ellen G. Zweibel , Keaton J. Burns , Jeffrey S. Oishi , Geoffrey M. Vasil

We present a theoretical investigation of thermal fluctuation statistics in a molecular motor. Energy transfer in the motor is described using a multidimensional discrete master equation with nearest-neighbor hopping. In this theory, energy…

Statistical Mechanics · Physics 2014-01-07 K. J. Challis , M. W. Jack

Clear evidence for a positive correlation is established between the magnitude of magnetic fluctuations in the lower-hybrid frequency range and enhancement of reconnection rates in a well-controlled laboratory plasma. The fluctuations…

Astrophysics · Physics 2009-11-07 Hantao Ji , Stephen Terry , Masaaki Yamada , Russell Kulsrud , Aleksey Kuritsyn , Yang Ren

We present theoretical analysis and the results of measurements of fundamental thermorefractive fluctuations in microspheres. Experimentally measured noise spectra are consistent with the theoretical model.

Statistical Mechanics · Physics 2009-11-10 M. L. Gorodetsky , I. S. Grudinin