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The reconstruction of phylogenetic networks is an important but challenging problem in phylogenetics and genome evolution, as the space of phylogenetic networks is vast and cannot be sampled well. One approach to the problem is to solve the…

Populations and Evolution · Quantitative Biology 2023-04-14 Louxin Zhang , Niloufar Abhari , Caroline Colijn , Yufeng Wu

Balanced partitioning is often a crucial first step in solving large-scale graph optimization problems, e.g., in some cases, a big graph can be chopped into pieces that fit on one machine to be processed independently before stitching the…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-12-10 Kevin Aydin , MohammadHossein Bateni , Vahab Mirrokni

We investigate the computation of minimum-cost spanning trees satisfying prescribed vertex degree constraints: Given a graph $G$ and a constraint function $D$, we ask for a (minimum-cost) spanning tree $T$ such that for each vertex $v$, $T$…

Data Structures and Algorithms · Computer Science 2026-05-05 Narek Bojikian , Alexander Firbas , Robert Ganian , Hung P. Hoang , Krisztina Szilágyi

Quantum annealers offer an efficient way to compute high quality solutions of NP-hard problems when expressed in a QUBO (quadratic unconstrained binary optimization) or an Ising form. This is done by mapping a problem onto the physical…

Quantum Physics · Physics 2022-04-26 Elijah Pelofske , Georg Hahn , Hristo N. Djidjev

Scalability of Graph Neural Networks (GNNs) remains a significant challenge. To tackle this, methods like coarsening, condensation, and computation trees are used to train on a smaller graph, resulting in faster computation. Nonetheless,…

Machine Learning · Computer Science 2026-04-13 Shubhajit Roy , Hrriday Ruparel , Kishan Ved , Anirban Dasgupta

We study the electrical distribution network reconfiguration problem, defined as follows. We are given an undirected graph with a root vertex, demand at each non-root vertex, and resistance on each edge. Then, we want to find a spanning…

Data Structures and Algorithms · Computer Science 2024-12-20 Takehiro Ito , Naonori Kakimura , Naoyuki Kamiyama , Yusuke Kobayashi , Yoshio Okamoto

Graph connectivity and network design problems are among the most fundamental problems in combinatorial optimization. The minimum spanning tree problem, the two edge-connected spanning subgraph problem (2-ECSS) and the tree augmentation…

Data Structures and Algorithms · Computer Science 2020-01-14 David Adjiashvili , Felix Hommelsheim , Moritz Mühlenthaler

The Planar Steiner Tree problem is one of the most fundamental NP-complete problems as it models many network design problems. Recall that an instance of this problem consists of a graph with edge weights, and a subset of vertices (often…

Data Structures and Algorithms · Computer Science 2018-11-19 Sándor Kisfaludi-Bak , Jesper Nederlof , Erik Jan van Leeuwen

Quantum annealing has emerged as a promising approach for solving NP-hard optimization problems, leveraging quantum phenomena such as quantum tunneling to navigate complex energy landscapes. However, the extent to which quantum tunneling…

Quantum Physics · Physics 2026-03-02 Vishwajeet Ohal , Pierre Boulanger

The Steiner Forest problem, also known as the Generalized Steiner Tree problem, is a fundamental optimization problem on edge-weighted graphs where, given a set of vertex pairs, the goal is to select a minimum-cost subgraph such that each…

Data Structures and Algorithms · Computer Science 2025-04-16 Ali Ahmadi , Iman Gholami , MohammadTaghi Hajiaghayi , Peyman Jabbarzade , Mohammad Mahdavi

In this project summary paper, we summarize the key results and use-cases explored in the German Federal Ministry of Education and Research (BMBF) funded project "Q-GRID" which aims to assess potential quantum utility optimization…

The rectilinear Steiner minimum tree (RSMT) problem computes the shortest network connecting a given set of points using only horizontal and vertical lines, possibly adding extra points (Steiner points) to minimize the total length. RSMT…

Data Structures and Algorithms · Computer Science 2025-03-05 Puhan Yang , Guchan Li

Embeddings of graphs into distributions of trees that preserve distances in expectation are a cornerstone of many optimization algorithms. Unfortunately, online or dynamic algorithms which use these embeddings seem inherently randomized and…

Data Structures and Algorithms · Computer Science 2021-02-11 Bernhard Haeupler , D Ellis Hershkowitz , Goran Zuzic

In the Steiner Tree problem we are given an undirected edge-weighted graph as input, along with a set $K$ of vertices called terminals. The task is to output a minimum-weight connected subgraph that spans all the terminals. The famous…

Data Structures and Algorithms · Computer Science 2024-07-01 Bart M. P. Jansen , Céline M. F. Swennenhuis

A spanning tree $T$ of graph $G$ is a $\rho$-approximate universal Steiner tree (UST) for root vertex $r$ if, for any subset of vertices $S$ containing $r$, the cost of the minimal subgraph of $T$ connecting $S$ is within a $\rho$ factor of…

Data Structures and Algorithms · Computer Science 2023-08-03 Costas Busch , Da Qi Chen , Arnold Filtser , Daniel Hathcock , D Ellis Hershkowitz , Rajmohan Rajaraman

The Steiner tree problem is one of the classic and most fundamental $\mathcal{NP}$-hard problems: given an arbitrary weighted graph, seek a minimum-cost tree spanning a given subset of the vertices (terminals). Byrka \emph{et al}. proposed…

Data Structures and Algorithms · Computer Science 2018-11-02 Chi-Yeh Chen

Designing energy-efficient networks is of critical importance for enabling state-of-the-art deep learning in mobile and edge settings where the computation and energy budgets are highly limited. Recently, Liu et al. (2019) framed the search…

Machine Learning · Computer Science 2020-07-10 Dilin Wang , Meng Li , Lemeng Wu , Vikas Chandra , Qiang Liu

Considering a graph with unknown weights, can we find the shortest path for a pair of nodes if we know the minimal Steiner trees associated with some subset of nodes? That is, with respect to a fixed latent decision-making system (e.g., a…

Machine Learning · Computer Science 2024-02-06 Guangmo Tong , Peng Zhao , Mina Samizadeh

We are interested in the design of robust (or resilient) capacitated rooted Steiner networks in case of terminals with uniform demands. Formally, we are given a graph, capacity and cost functions on the edges, a root, a subset of nodes…

Optimization and Control · Mathematics 2018-01-16 Cédric Bentz , Marie-Christine Costa , Pierre-Louis Poirion , Thomas Ridremont

State-of-the-art machine learning solutions mainly focus on creating highly accurate models without constraints on hardware resources. Stream mining algorithms are designed to run on resource-constrained devices, thus a focus on low power…

Machine Learning · Computer Science 2022-05-09 Eva Garcia-Martin , Albert Bifet , Niklas Lavesson , Rikard König , Henrik Linusson
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