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When visualizing a high-dimensional dataset, dimension reduction techniques are commonly employed which provide a single 2-dimensional view of the data. We describe ENS-t-SNE: an algorithm for Embedding Neighborhoods Simultaneously that…

Machine Learning · Computer Science 2024-04-02 Jacob Miller , Vahan Huroyan , Raymundo Navarrete , Md Iqbal Hossain , Stephen Kobourov

This paper investigates the theoretical foundations of the t-distributed stochastic neighbor embedding (t-SNE) algorithm, a popular nonlinear dimension reduction and data visualization method. A novel theoretical framework for the analysis…

Machine Learning · Statistics 2022-11-02 T. Tony Cai , Rong Ma

t-distributed Stochastic Neighborhood Embedding (t-SNE) is a method for dimensionality reduction and visualization that has become widely popular in recent years. Efficient implementations of t-SNE are available, but they scale poorly to…

Machine Learning · Computer Science 2019-02-26 George C. Linderman , Manas Rachh , Jeremy G. Hoskins , Stefan Steinerberger , Yuval Kluger

Dimensionality reduction methods such as t-SNE are designed to preserve local neighborhood structure but do not explicitly account for how probability mass is distributed, often leading to distortions of data density. We reformulate…

Machine Learning · Computer Science 2026-05-05 Maksim Kazanskii

The t-distributed Stochastic Neighbor Embedding (t-SNE) algorithm is a ubiquitously employed dimensionality reduction (DR) method. Its non-parametric nature and impressive efficacy motivated its parametric extension. It is however bounded…

Machine Learning · Computer Science 2020-10-06 Francesco Crecchi , Cyril de Bodt , Michel Verleysen , John A. Lee , Davide Bacciu

This paper presents a kernelized version of the t-SNE algorithm, capable of mapping high-dimensional data to a low-dimensional space while preserving the pairwise distances between the data points in a non-Euclidean metric. This can be…

Machine Learning · Computer Science 2023-11-22 Denis C. Ilie-Ablachim , Bogdan Dumitrescu , Cristian Rusu

t-Stochastic Neighbor Embedding (t-SNE) is a non-parametric data visualization method in classical machine learning. It maps the data from the high-dimensional space into a low-dimensional space, especially a two-dimensional plane, while…

Quantum Physics · Physics 2022-02-10 Yoshiaki Kawase , Kosuke Mitarai , Keisuke Fujii

We present S+t-SNE, an adaptation of the t-SNE algorithm designed to handle infinite data streams. The core idea behind S+t-SNE is to update the t-SNE embedding incrementally as new data arrives, ensuring scalability and adaptability to…

Artificial Intelligence · Computer Science 2025-01-22 Pedro C. Vieira , João P. Montrezol , João T. Vieira , João Gama

T-SNE is a well-known approach to embedding high-dimensional data and has been widely used in data visualization. The basic assumption of t-SNE is that the data are non-constrained in the Euclidean space and the local proximity can be…

Machine Learning · Computer Science 2015-08-06 Mian Wang , Dong Wang

t-distributed stochastic neighbor embedding (t-SNE) is a well-established visualization method for complex high-dimensional data. However, the original t-SNE method is nonparametric, stochastic, and often cannot well prevserve the global…

Computer Vision and Pattern Recognition · Computer Science 2022-01-14 Zixia Zhou , Yuanyuan Wang , Boudewijn P. F. Lelieveldt , Qian Tao

Parametric embedding methods such as parametric t-SNE (pt-SNE) have been widely adopted for data visualization and out-of-sample data embedding without further computationally expensive optimization or approximation. However, the…

Machine Learning · Computer Science 2018-04-24 Martin Renqiang Min , Hongyu Guo , Dinghan Shen

Conditional t-SNE (ct-SNE) is a recent extension to t-SNE that allows removal of known cluster information from the embedding, to obtain a visualization revealing structure beyond label information. This is useful, for example, when one…

Machine Learning · Computer Science 2023-04-12 Edith Heiter , Bo Kang , Ruth Seurinck , Jefrey Lijffijt

Stochastic Neighbor Embedding (SNE) methods minimize the divergence between the similarity matrix of a high-dimensional data set and its counterpart from a low-dimensional embedding, leading to widely applied tools for data visualization.…

Machine Learning · Computer Science 2018-09-13 Yao Lu , Jukka Corander , Zhirong Yang

Dimension reduction, widely used in science, maps high-dimensional data into low-dimensional space. We investigate a basic mathematical model underlying the techniques of stochastic neighborhood embedding (SNE) and its popular variant…

Machine Learning · Statistics 2025-03-26 Ben Weinkove

Neighbor Embedding (NE) aims to preserve pairwise similarities between data items and has been shown to yield an effective principle for data visualization. However, even the best existing NE methods such as Stochastic Neighbor Embedding…

Machine Learning · Computer Science 2021-09-15 Zhirong Yang , Yuwei Chen , Denis Sedov , Samuel Kaski , Jukka Corander

We describe a new method called t-ETE for finding a low-dimensional embedding of a set of objects in Euclidean space. We formulate the embedding problem as a joint ranking problem over a set of triplets, where each triplet captures the…

Artificial Intelligence · Computer Science 2017-05-18 Ehsan Amid , Nikos Vlassis , Manfred K. Warmuth

Cluster visualization is an essential task for nonlinear dimensionality reduction as a data analysis tool. It is often believed that Student t-Distributed Stochastic Neighbor Embedding (t-SNE) can show clusters for well clusterable data,…

Machine Learning · Computer Science 2021-10-07 Zhirong Yang , Yuwei Chen , Jukka Corander

Dimensionality reduction methods such as t-SNE and UMAP are popular methods for visualizing data with a potential (latent) clustered structure. They are known to group data points at the same time as they embed them, resulting in…

Machine Learning · Computer Science 2025-09-04 Elizabeth Coda , Ery Arias-Castro , Gal Mishne

A fundamental task in machine learning involves visualizing high-dimensional data sets that arise in high-impact application domains. When considering the context of large imbalanced data, this problem becomes much more challenging. In this…

Machine Learning · Computer Science 2021-09-21 Parisa Hajibabaee , Farhad Pourkamali-Anaraki , Mohammad Amin Hariri-Ardebili

t-SNE is a popular tool for embedding multi-dimensional datasets into two or three dimensions. However, it has a large computational cost, especially when the input data has many dimensions. Many use t-SNE to embed the output of a neural…

Machine Learning · Computer Science 2019-12-04 Rikhav Shah , Sandeep Silwal
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