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Automatic phenotyping is a task of identifying cohorts of patients that match a predefined set of criteria. Phenotyping typically involves classifying long clinical documents that contain thousands of tokens. At the same time, recent…

Computation and Language · Computer Science 2021-05-17 Xin Su , Timothy Miller , Xiyu Ding , Majid Afshar , Dmitriy Dligach

Large language models (LLMs) have achieved remarkable success, yet aligning their generations with human preferences remains a critical challenge. Existing approaches to preference modeling often rely on an explicit or implicit reward…

Computation and Language · Computer Science 2025-05-09 Zhuocheng Gong , Jian Guan , Wei Wu , Huishuai Zhang , Dongyan Zhao

Medical texts, particularly electronic medical records (EMRs), are a cornerstone of modern healthcare, capturing critical information about patient care, diagnoses, and treatments. These texts hold immense potential for advancing clinical…

Computation and Language · Computer Science 2025-11-12 Mucheng Ren , Yucheng Yan , He Chen , Danqing Hu , Jun Xu , Xian Zeng

Clinical reasoning agents based on large language models (LLMs) aim to automate tasks such as intensive care unit (ICU) monitoring and patient state tracking from electronic health records (EHRs). Existing systems typically rely on manually…

Artificial Intelligence · Computer Science 2026-05-12 Timothy Ossowski , Xinchi Liu , Danyal Maqbool , Vaibhav Dhanuka , Sheng Zhang , Hoifung Poon , Majid Afshar , Tyler Bradshaw , Junjie Hu

Grading Objective Structured Clinical Examinations (OSCEs) is a time-consuming and expensive process, traditionally requiring extensive manual effort from human experts. In this study, we explore the potential of Large Language Models…

We propose a novel and interpretable embedding method to represent the international statistical classification codes of diseases and related health problems (i.e., ICD codes). This method considers a self-attention mechanism within the…

Applications · Statistics 2019-06-14 Dixin Luo , Hongteng Xu , Lawrence Carin

Due to increased access to clinical trial outcomes and analysis, researchers and scientists are able to iterate or improve upon relevant approaches more effectively. However, the metrics and related results of clinical trials typically do…

Computation and Language · Computer Science 2021-01-12 Shwetha Bharadwaj , Melanie Laffin

Electronic Health Records (EHRs) provide vital contextual information to radiologists and other physicians when making a diagnosis. Unfortunately, because a given patient's record may contain hundreds of notes and reports, identifying…

Objective: Clinical trials are essential for advancing pharmaceutical interventions, but they face a bottleneck in selecting eligible participants. Although leveraging electronic health records (EHR) for recruitment has gained popularity,…

Computation and Language · Computer Science 2026-01-15 Mojdeh Rahmanian , Seyed Mostafa Fakhrahmad , Seyedeh Zahra Mousavi

Medical code assignment from clinical text is a fundamental task in clinical information system management. As medical notes are typically lengthy and the medical coding system's code space is large, this task is a long-standing challenge.…

Computation and Language · Computer Science 2022-03-16 Shaoxiong Ji , Shirui Pan , Pekka Marttinen

Spatially coupled, parallel concatenated codes (SC-PCCs) have been shown to approach channel capacity when decoded using optimal iterative methods. However, under complexity constraints such decoding strategies can result in unacceptable…

Information Theory · Computer Science 2021-09-07 Andrew D. Cummins , David G. M. Mitchell , Daniel J. Costello,

Automatic code generation is to generate the program code according to the given natural language description. The current mainstream approach uses neural networks to encode natural language descriptions, and output abstract syntax trees…

Software Engineering · Computer Science 2022-02-16 Maosheng Zhong , Gen Liu , Hongwei Li , Jiangling Kuang , Jinshan Zeng , Mingwen Wang

Medical image segmentation plays a crucial role in clinical medicine, serving as a key tool for auxiliary diagnosis, treatment planning, and disease monitoring. However, traditional segmentation methods such as U-Net are often limited by…

Image and Video Processing · Electrical Eng. & Systems 2025-12-22 Gaoyu Chen , Haixia Pan

We demonstrate that error correcting codes (ECCs) can be used to construct a labeled data set for finetuning of "trainable" communication systems without sacrificing resources for the transmission of known symbols. This enables adaptive…

Information Theory · Computer Science 2018-07-03 Stefan Schibisch , Sebastian Cammerer , Sebastian Dörner , Jakob Hoydis , Stephan ten Brink

ICD coding from electronic clinical records is a manual, time-consuming and expensive process. Code assignment is, however, an important task for billing purposes and database organization. While many works have studied the problem of…

Computation and Language · Computer Science 2020-11-18 Arthur D. Reys , Danilo Silva , Daniel Severo , Saulo Pedro , Marcia M. de Souza e Sá , Guilherme A. C. Salgado

We introduce a method for securely delivering a set of messages to a group of clients over a broadcast erasure channel where each client is interested in a distinct message. Each client is able to obtain its own message but not the others'.…

Information Theory · Computer Science 2013-05-08 Shahriar Etemadi Tajbakhsh , Parastoo Sadeghi , Rodney Kennedy

In recent years, coded distributed computing (CDC) has attracted significant attention, because it can efficiently facilitate many delay-sensitive computation tasks against unexpected latencies in distributed computing systems. Despite such…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-07-12 Baoqian Wang , Junfei Xie , Kejie Lu , Yan Wan , Shengli Fu

Video coding has traditionally been developed to support services such as video streaming, videoconferencing, digital TV, and so on. The main intent was to enable human viewing of the encoded content. However, with the advances in deep…

Image and Video Processing · Electrical Eng. & Systems 2024-11-19 Hadi Hadizadeh , Ivan V. Bajić

This paper presents Z-Code++, a new pre-trained language model optimized for abstractive text summarization. The model extends the state of the art encoder-decoder model using three techniques. First, we use a two-phase pre-training process…

In this work, we present a novel technique to improve the quality of draft clinical notes for physicians. This technique is concentrated on the ability to model implicit physician conversation styles and note preferences. We also introduce…

Computation and Language · Computer Science 2024-08-08 Nathan Brake , Thomas Schaaf