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This paper introduces distribution-based prediction, a novel approach to using Large Language Models (LLMs) as predictive tools by interpreting output token probabilities as distributions representing the models' learned representation of…

Artificial Intelligence · Computer Science 2024-11-07 Caleb Bradshaw , Caelen Miller , Sean Warnick

Statistical analysis of evolutionary-related protein sequences provides insights about their structure, function, and history. We show that Restricted Boltzmann Machines (RBM), designed to learn complex high-dimensional data and their…

Quantitative Methods · Quantitative Biology 2019-02-28 Jérôme Tubiana , Simona Cocco , Rémi Monasson

Demographic models built from genetic data play important roles in illuminating prehistorical events and serving as null models in genome scans for selection. We introduce an inference method based on the joint frequency spectrum of genetic…

Populations and Evolution · Quantitative Biology 2010-05-10 Ryan N. Gutenkunst , Ryan D. Hernandez , Scott H. Williamson , Carlos D. Bustamante

In programming, the names for the program entities, especially for the methods, are the intuitive characteristic for understanding the functionality of the code. To ensure the readability and maintainability of the programs, method names…

Software Engineering · Computer Science 2022-03-09 Fang Liu , Ge Li , Zhiyi Fu , Shuai Lu , Yiyang Hao , Zhi Jin

Large language models (LLMs) have shown promise in synthetic tabular data generation, yet existing methods struggle to preserve complex feature dependencies, particularly among categorical variables. This work introduces a…

Machine Learning · Computer Science 2025-05-07 Andrey Sidorenko

In this paper, we proposed a novel Probabilistic Attribute Tree-CNN (PAT-CNN) to explicitly deal with the large intra-class variations caused by identity-related attributes, e.g., age, race, and gender. Specifically, a novel PAT module with…

Computer Vision and Pattern Recognition · Computer Science 2018-12-19 Jie Cai , Zibo Meng , Ahmed Shehab Khan , Zhiyuan Li , James O'Reilly , Yan Tong

We demonstrate that replacing an LSTM encoder with a self-attentive architecture can lead to improvements to a state-of-the-art discriminative constituency parser. The use of attention makes explicit the manner in which information is…

Computation and Language · Computer Science 2018-05-04 Nikita Kitaev , Dan Klein

For subjective tasks such as hate detection, where people perceive hate differently, the Large Language Model's (LLM) ability to represent diverse groups is unclear. By including additional context in prompts, we comprehensively analyze…

Computation and Language · Computer Science 2024-10-04 Sarah Masud , Sahajpreet Singh , Viktor Hangya , Alexander Fraser , Tanmoy Chakraborty

Data selection for finetuning Large Language Models (LLMs) can be framed as a budget-constrained optimization problem: maximizing a model's downstream performance under a strict training data budget. Solving this problem is generally…

Machine Learning · Computer Science 2025-10-01 Animesh Jha , Harshit Gupta , Ananjan Nandi

As in many other areas of science, systems biology makes extensive use of statistical association and significance estimates in contingency tables, a type of categorical data analysis known in this field as enrichment (also…

Quantitative Methods · Quantitative Biology 2011-11-10 Ricardo Vêncio , Ilya Shmulevich

Reverse engineers would acquire valuable insights from descriptive function names, which are absent in publicly released binaries. Recent advances in binary function name prediction using data-driven machine learning show promise. However,…

Software Engineering · Computer Science 2024-05-16 Xiaoling Zhang , Zhengzi Xu , Shouguo Yang , Zhi Li , Zhiqiang Shi , Limin Sun

This study evaluates the ability of Large Language Model (LLM)-based Subpopulation Representative Models (SRMs) to generalize from empirical data, utilizing in-context learning with data from the 2016 and 2020 American National Election…

Machine Learning · Computer Science 2024-02-13 Gabriel Simmons , Vladislav Savinov

When combined with In-Context Learning, a technique that enables models to adapt to new tasks by incorporating task-specific examples or demonstrations directly within the input prompt, autoregressive language models have achieved good…

Computation and Language · Computer Science 2024-10-18 Enzo Shiraishi , Raphael Y. de Camargo , Henrique L. P. Silva , Ronaldo C. Prati

Large language models (LLMs) are known to generate biased responses where the opinions of certain groups and populations are underrepresented. Here, we present a novel approach to achieve controllable generation of specific viewpoints using…

Computation and Language · Computer Science 2024-04-04 Junyi Li , Ninareh Mehrabi , Charith Peris , Palash Goyal , Kai-Wei Chang , Aram Galstyan , Richard Zemel , Rahul Gupta

We introduce CCMnet, an R package designed to generate network ensembles that accurately reflect the uncertainty inherent in empirical data. While traditional network modeling often results in ensembles with fixed property values or…

Computation · Statistics 2026-03-04 Ravi Goyal , Victor De Gruttola , Natasha K. Martin , Lior Rennert , Jukka-Pekka Onnela

In this paper, we present a new R package COREclust dedicated to the detection of representative variables in high dimensional spaces with a potentially limited number of observations. Variable sets detection is based on an original graph…

Mathematical Software · Computer Science 2018-05-28 Camille Champion , Anne-Claire Brunet , Jean-Michel Loubes , Laurent Risser

Recurrent neural networks (RNNs) were recently proposed for the session-based recommendation task. The models showed promising improvements over traditional recommendation approaches. In this work, we further study RNN-based models for…

Machine Learning · Computer Science 2016-09-19 Yong Kiam Tan , Xinxing Xu , Yong Liu

We study the presence of heteronormative biases and prejudice against interracial romantic relationships in large language models by performing controlled name-replacement experiments for the task of relationship prediction. We show that…

Computation and Language · Computer Science 2024-10-08 Abhilasha Sancheti , Haozhe An , Rachel Rudinger

Developers routinely work with source files whose variable names are generic or misleading, and with teams moving quickly, many functions are left undocumented. This slows comprehension, increases the risk of subtle bugs, and makes it…

Software Engineering · Computer Science 2025-12-02 Muhammad Yousuf , Akshat Bagade , Chhittebbayi Penugonda , Maanas Baraya

The alignment of large language models (LLMs) with human values increasingly relies on using other LLMs as automated judges, or ``autoraters''. However, their reliability is limited by a foundational issue: they are trained on discrete…

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