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Recently, the Centers for Disease Control and Prevention (CDC) has worked with other federal agencies to identify counties with increasing coronavirus disease 2019 (COVID-19) incidence (hotspots) and offers support to local health…

Machine Learning · Statistics 2022-05-04 Shixiang Zhu , Alexander Bukharin , Liyan Xie , Khurram Yamin , Shihao Yang , Pinar Keskinocak , Yao Xie

We present an interpretable high-resolution spatio-temporal model to estimate COVID-19 deaths together with confirmed cases one-week ahead of the current time, at the county-level and weekly aggregated, in the United States. A notable…

Applications · Statistics 2021-08-24 Shixiang Zhu , Alexander Bukharin , Liyan Xie , Mauricio Santillana , Shihao Yang , Yao Xie

Understanding the spatio-temporal patterns of the coronavirus disease 2019 (COVID-19) is essential to construct public health interventions. Spatially referenced data can provide richer opportunities to understand the mechanism of the…

Methodology · Statistics 2022-07-15 Jaewoo Park , Seorim Yi , Won Chang , Jorge Mateu

In this work we present a spatial-temporal convolutional neural network for predicting future COVID-19 related symptoms severity among a population, per region, given its past reported symptoms. This can help approximate the number of…

Machine Learning · Computer Science 2021-01-15 Ravid Shwartz-Ziv , Itamar Ben Ari , Amitai Armon

With COVID-19 affecting every country globally and changing everyday life, the ability to forecast the spread of the disease is more important than any previous epidemic. The conventional methods of disease-spread modeling, compartmental…

Machine Learning · Statistics 2022-08-19 Benjamin Lucas , Behzad Vahedi , Morteza Karimzadeh

In this work, we examine a novel forecasting approach for COVID-19 case prediction that uses Graph Neural Networks and mobility data. In contrast to existing time series forecasting models, the proposed approach learns from a single…

Machine Learning · Computer Science 2020-07-08 Amol Kapoor , Xue Ben , Luyang Liu , Bryan Perozzi , Matt Barnes , Martin Blais , Shawn O'Banion

In this paper, we model the trajectory of the cumulative confirmed cases and deaths of COVID-19 (in log scale) via a piecewise linear trend model. The model naturally captures the phase transitions of the epidemic growth rate via…

Econometrics · Economics 2020-07-10 Feiyu Jiang , Zifeng Zhao , Xiaofeng Shao

Spatiotemporal modelling of infectious diseases such as COVID-19 involves using a variety of epidemiological metrics such as regional proportion of cases or regional positivity rates. Although observing their changes over time is critical…

Understanding the spread of infectious diseases such as COVID-19 is crucial for informed decision-making and resource allocation. A critical component of disease behavior is the velocity with which disease spreads, defined as the rate of…

Applications · Statistics 2025-12-23 Fernando Rodriguez Avellaneda , Jorge Mateu , Paula Moraga

Mathematical modeling has been fundamental to achieving near real-time accurate forecasts of the spread of COVID-19. Similarly, the design of non-pharmaceutical interventions has played a key role in the application of policies to contain…

Physics and Society · Physics 2023-04-04 Jorge P. Rodríguez , Alberto Aleta , Yamir Moreno

Raw data on the cumulative number of deaths at a country level generally indicate a spatially variable distribution of the incidence of COVID-19 disease. An important issue is to determine whether this spatial pattern is a consequence of…

Populations and Evolution · Quantitative Biology 2020-07-21 Lionel Roques , Olivier Bonnefon , Virgile Baudrot , Samuel Soubeyrand , Henri Berestycki

The outbreaks of Coronavirus Disease 2019 (COVID-19) have impacted the world significantly. Modeling the trend of infection and real-time forecasting of cases can help decision making and control of the disease spread. However, data-driven…

Populations and Evolution · Quantitative Biology 2020-09-18 Zhijian Li , Yunling Zheng , Jack Xin , Guofa Zhou

During 2020, the infection rate of COVID-19 has been investigated by many scholars from different research fields. In this context, reliable and interpretable forecasts of disease incidents are a vital tool for policymakers to manage…

Machine Learning · Computer Science 2021-01-05 Cornelius Fritz , Emilio Dorigatti , David Rügamer

Since the first coronavirus case was identified in the U.S. on Jan. 21, more than 1 million people in the U.S. have confirmed cases of COVID-19. This infectious respiratory disease has spread rapidly across more than 3000 counties and 50…

Machine Learning · Computer Science 2021-06-25 Shuang Li , Lu Wang , Xinyun Chen , Yixiang Fang , Yan Song

Chest computed tomography (CT) has played an essential diagnostic role in assessing patients with COVID-19 by showing disease-specific image features such as ground-glass opacity and consolidation. Image segmentation methods have proven to…

Image and Video Processing · Electrical Eng. & Systems 2021-07-26 Seong Tae Kim , Leili Goli , Magdalini Paschali , Ashkan Khakzar , Matthias Keicher , Tobias Czempiel , Egon Burian , Rickmer Braren , Nassir Navab , Thomas Wendler

The COVID-19 pandemic represents the most significant public health disaster since the 1918 influenza pandemic. During pandemics such as COVID-19, timely and reliable spatio-temporal forecasting of epidemic dynamics is crucial. Deep…

Machine Learning · Computer Science 2020-11-25 Lijing Wang , Aniruddha Adiga , Srinivasan Venkatramanan , Jiangzhuo Chen , Bryan Lewis , Madhav Marathe

The spread of COVID-19 has been greatly impacted by regulatory policies and behavior patterns that vary across counties, states, and countries. Population-level dynamics of COVID-19 can generally be described using a set of ordinary…

Applications · Statistics 2022-04-11 Joshua P. Keller , Tianjian Zhou , Andee Kaplan , G. Brooke Anderson , Wen Zhou

Although there is substantial literature on identifying structural changes for continuous spatio-temporal processes, the same is not true for categorical spatio-temporal data. This work bridges that gap and proposes a novel spatio-temporal…

Methodology · Statistics 2023-05-04 Siddharth Rawat , Abe Durrant , Adam Simpson , Grant Nielson , Candace Berrett , Soudeep Deb

The outbreak of COVID-19, beginning in 2019 and continuing through the time of writing, has led to renewed interest in the mathematical modeling of infectious disease. Recent works have focused on partial differential equation (PDE) models,…

Populations and Evolution · Quantitative Biology 2022-10-26 Malú Grave , Alex Viguerie , Gabriel F. Barros , Alessandro Reali , Roberto F. S. Andrade , Alvaro L. G. A. Coutinho

We demonstrate the ability of statistical data assimilation to identify the measurements required for accurate state and parameter estimation in an epidemiological model for the novel coronavirus disease COVID-19. Our context is an effort…

Populations and Evolution · Quantitative Biology 2020-08-04 Eve Armstrong , Manuela Runge , Jaline Gerardin
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