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Related papers: Slot Filling for Biomedical Information Extraction

200 papers

Exploiting natural language processing in the clinical domain requires de-identification, i.e., anonymization of personal information in texts. However, current research considers de-identification and downstream tasks, such as concept…

Computation and Language · Computer Science 2020-05-20 Lukas Lange , Heike Adel , Jannik Strötgen

Automatically extracting key information from scientific documents has the potential to help scientists work more efficiently and accelerate the pace of scientific progress. Prior work has considered extracting document-level entity…

Digital Libraries · Computer Science 2021-06-04 Vijay Viswanathan , Graham Neubig , Pengfei Liu

Document Information Extraction (DIE) aims to extract structured information from Visually Rich Documents (VRDs). Previous full-training approaches have demonstrated strong performance but may struggle with generalization to unseen data. In…

Computation and Language · Computer Science 2024-12-24 Jinyu Zhang , Zhiyuan You , Jize Wang , Xinyi Le

As an essential task in task-oriented dialog systems, slot filling requires extensive training data in a certain domain. However, such data are not always available. Hence, cross-domain slot filling has naturally arisen to cope with this…

Computation and Language · Computer Science 2020-04-27 Zihan Liu , Genta Indra Winata , Peng Xu , Pascale Fung

Event extraction (EE) is an essential task of information extraction, which aims to extract structured event information from unstructured text. Most prior work focuses on extracting flat events while neglecting overlapped or nested ones. A…

Computation and Language · Computer Science 2022-09-07 Hu Cao , Jingye Li , Fangfang Su , Fei Li , Hao Fei , Shengqiong Wu , Bobo Li , Liang Zhao , Donghong Ji

Information Extraction (IE) is the task of automatically extracting structured information from unstructured/semi-structured machine-readable documents. Among various IE tasks, extracting actionable intelligence from ever-increasing amount…

Computation and Language · Computer Science 2013-11-19 Seyed-Mehdi-Reza Beheshti , Srikumar Venugopal , Seung Hwan Ryu , Boualem Benatallah , Wei Wang

Using different sources of information to support automated extracting of relations between biomedical concepts contributes to the development of our understanding of biological systems. The primary comprehensive source of these relations…

Computation and Language · Computer Science 2020-09-21 Diana Sousa , Andre Lamurias , Francisco M. Couto

Document-Level Biomedical Relation Extraction (Bio-RE) aims to identify relations between biomedical entities within extensive texts, serving as a crucial subfield of biomedical text mining. Existing Bio-RE methods struggle with…

Computation and Language · Computer Science 2025-01-10 Yufei Shang , Yanrong Guo , Shijie Hao , Richang Hong

Information extraction (IE) plays very important role in natural language processing (NLP) and is fundamental to many NLP applications that used to extract structured information from unstructured text data. Heuristic-based searching and…

Computation and Language · Computer Science 2023-07-04 Shiyu Yuan , Carlo Lipizzi

Open Information Extraction (Open IE) systems aim to obtain relation tuples with highly scalable extraction in portable across domain by identifying a variety of relation phrases and their arguments in arbitrary sentences. The first…

Computation and Language · Computer Science 2016-07-12 Duc-Thuan Vo , Ebrahim Bagheri

Accurate representation of medical information is crucial for patient safety, yet artificial intelligence (AI) systems, such as Large Language Models (LLMs), encounter challenges in error-free clinical text interpretation. This paper…

Computation and Language · Computer Science 2024-04-30 Nadia Saeed

Few-shot intent classification and slot filling are important but challenging tasks due to the scarcity of finely labeled data. Therefore, current works first train a model on source domains with sufficiently labeled data, and then transfer…

Computation and Language · Computer Science 2023-12-22 Jie Han , Yixiong Zou , Haozhao Wang , Jun Wang , Wei Liu , Yao Wu , Tao Zhang , Ruixuan Li

Disease name recognition and normalization, which is generally called biomedical entity linking, is a fundamental process in biomedical text mining. Recently, neural joint learning of both tasks has been proposed to utilize the mutual…

Computation and Language · Computer Science 2021-04-22 Shogo Ujiie , Hayate Iso , Shuntaro Yada , Shoko Wakamiya , Eiji Aramaki

With the advent of artificial intelligence (AI), many researchers are attempting to extract structured information from document-level biomedical literature by fine-tuning large language models (LLMs). However, they face significant…

Neural and Evolutionary Computing · Computer Science 2026-02-26 Lei Zhao , Ling Kang , Quan Guo

Biomedical event extraction is an information extraction task to obtain events from biomedical text, whose targets include the type, the trigger, and the respective arguments involved in an event. Traditional biomedical event extraction…

Computation and Language · Computer Science 2024-03-20 Pengchao Wu , Xuefeng Li , Jinghang Gu , Longhua Qian , Guodong Zhou

Large Language Models (LLMs) exhibit the ability to perform in-context learning (ICL), where they acquire new tasks directly from examples provided in demonstrations. This process is thought to operate through an implicit task selection…

Computation and Language · Computer Science 2024-12-17 Xingwei Qu , Yiming Liang , Yucheng Wang , Tianyu Zheng , Tommy Yue , Xingyuan Bu , Lei Ma , Stephen W. Huang , Jiajun Zhang , Yinan Shi , Chenghua Lin , Jie Fu , Ge Zhang

With the advancement of multimedia technologies, news documents and user-generated content are often represented as multiple modalities, making Multimedia Event Extraction (MEE) an increasingly important challenge. However, recent MEE…

Computation and Language · Computer Science 2024-10-03 Philipp Seeberger , Dominik Wagner , Korbinian Riedhammer

Information extraction from the scientific literature is one of the main techniques to transform unstructured knowledge hidden in the text into structured data which can then be used for decision-making in down-stream tasks. One such area…

Computation and Language · Computer Science 2024-12-17 Melanie McGrath , Harrison Bailey , Necva Bölücü , Xiang Dai , Sarvnaz Karimi , Cecile Paris

The work presented in this master thesis consists of extracting a set of events from texts written in natural language. For this purpose, we have based ourselves on the basic notions of the information extraction as well as the open…

Computation and Language · Computer Science 2019-07-03 Sihem Sahnoun

Open Information Extraction (OIE) is a structured prediction (SP) task in Natural Language Processing (NLP) that aims to extract structured $n$-ary tuples - usually subject-relation-object triples - from free text. The word embeddings in…

Computation and Language · Computer Science 2024-03-22 Fauzan Farooqui , Thanmay Jayakumar , Pulkit Mathur , Mansi Radke