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Stochastic reaction-diffusion models can be analytically studied on complex networks using the linear noise approximation. This is illustrated through the use of a specific stochastic model, which displays traveling waves in its…

Statistical Mechanics · Physics 2015-06-16 Malbor Asllani , Tommaso Biancalani , Duccio Fanelli , Alan J. McKane

We introduce a mathematically rigorous analysis of a generalized spin-boson system for the treatment of a donor-acceptor (reactant-product) quantum system coupled to a thermal quantum noise. The donor/acceptor probability dynamics describes…

Mathematical Physics · Physics 2012-09-05 Marco Merkli , Gennady Berman , Richard Sayre

Four basic processes are envisioned, among them migration (diffusion), local rotation (reorientation), isothermic chemical reactions and nucleation. All of them are unified by a common approach to the barrier currents that has been…

Materials Science · Physics 2009-03-05 Mladen Georgiev

In stochastic resonance, a periodically forced Brownian particle in a double-well potential jumps between minima at rare increments, the prediction of which poses a major theoretical challenge. Here, we use a path-integral method to find a…

Data Analysis, Statistics and Probability · Physics 2020-04-02 L. T. Giorgini , S. H. Lim , W. Moon , J. S. Wettlaufer

The diffraction slope parameter is investigated for elastic proton-proton and proton-antiproton scattering based on the all available experimental data at intermediate square of momentum transfer in the main. Energy dependence of the…

High Energy Physics - Phenomenology · Physics 2008-12-03 V. A. Okorokov

Gene expression is significantly stochastic making modeling of genetic networks challenging. We present an approximation that allows the calculation of not only the mean and variance but also the distribution of protein numbers. We assume…

Molecular Networks · Quantitative Biology 2008-12-18 Vahid Shahrezaei , Peter S. Swain

Nucleon drift and diffusion mechanisms in central collisions of asymmetric heavy-ions at near-barrier energies are investigated in the framework of a stochastic mean-field approach. Expressions for diffusion and drift coefficients for…

Nuclear Theory · Physics 2011-07-08 B. Yilmaz , S. Ayik , D. Lacroix , K. Washiyama

The stationary phase method is applied to diffusion by a potential barrier for an incoming wave packet with energies greater then the barrier height. It is observed that a direct application leads to paradoxical results. The correct…

Quantum Physics · Physics 2007-05-23 A. E. Bernardini , S. De Leo , P. Rotelli

Biomolecular folding, at least in simple systems, can be described as a two state transition in a free energy landscape with two deep wells separated by a high barrier. Transition paths are the short part of the trajectories that cross the…

Statistical Mechanics · Physics 2018-12-10 M. Laleman , E. Carlon , H. Orland

A statistical model is used to determine how stochastic fluctuations in the intensities of orthogonal polarization modes contribute to the modulation and depolarization of pulsar radio emission. General expressions for the distributions of…

High Energy Astrophysical Phenomena · Physics 2023-12-19 M. M. McKinnon

We investigate theoretically the stochastic dynamics of Resonance Electronic Energy Transfer (RET), in a bi-dimensional overexcited ensemble of donor and acceptor molecules. We find that, after initial optical excitation of all the donors,…

Mesoscale and Nanoscale Physics · Physics 2023-11-27 R. Avriller , A. Marché , G. Jonusauskas

A master equation describing the evolution of averaged molecular state occupancies in molecular systems where alternation of molecular energy levels is caused by discrete dichotomous and trichotomous stochastic fields, is derived. This…

Chemical Physics · Physics 2012-12-06 E. G. Petrov , V. I. Teslenko

Quantum state transfer in optical microcavities plays an important role in quantum information processing, and is essential in many optical devices, such as optical frequency converter and diode. Existing schemes are effective and realized…

Optics · Physics 2019-12-03 Xu-sheng Xu , Hao Zhang , Xiang-Yu Kong , Min Wang , Gui-Lu Long

For the calculation of polarization transfer observables for quasielastic scattering of protons on nuclei, a formalism in the context of the Relativistic Plane Wave Impulse Approximation is developed, in which the interaction matrix is…

Nuclear Theory · Physics 2008-11-26 B. I. S. van der Ventel , G. C. Hillhouse , P. R. De Kock , S. J. Wallace

We extend previous theories of stochastic ion heating to account for the motion of ions along the magnetic field. We derive an analytic expression for the ion-to-proton perpendicular temperature ratio in the solar wind for any ion species,…

Solar and Stellar Astrophysics · Physics 2015-06-16 B. D. G. Chandran , D. Verscharen , E. Quataert , J. C. Kasper , P. A. Isenberg , S. Bourouaine

The infrared spectroscopy and proton transfer dynamics together with the associated tunneling splittings for H/D-transfer in oxalate are investigated using a machine learning-based potential energy surface (PES) of CCSD(T) quality,…

We investigate phonon transport in perovskite strontium titanate (SrTiO3) which is stable above its phase transition temperature (~105 K) by using first-principles molecular dynamics and anharmonic lattice dynamics. Unlike conventional…

Computational Physics · Physics 2015-06-09 Lei Feng , Takuma Shiga , Junichiro Shiomi

A new dispersion (asymptotic) theory is proposed for the peripheral sub- and above-barrier charged particle transfer $A(x,y)B$ reaction in the three-body ($A$, $a$ and $y$) model where $ x= y +a$ and $B=A+a$, and $ a$ is a transferred…

Nuclear Theory · Physics 2020-04-03 R. Yarmukhamedov , K. I. Tursunmakhatov

In a physical system, changing parameters such as temperature can induce a phase transition: an abrupt change from one state of matter to another. Analogous phenomena have recently been observed in large language models. Typically, the task…

Machine Learning · Computer Science 2024-05-28 Julian Arnold , Flemming Holtorf , Frank Schäfer , Niels Lörch

For both reactions we use an approach similar to that of compound-nucleus reaction theory. For neutron-induced fission, we describe the compound system generated by absorption of the neutron and the nuclear system near the scission point as…

Nuclear Theory · Physics 2024-11-26 Hans A. Weidenmüller