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The soil seed bank is a major component of plant communities. However, long-term analyses of the dynamics of the seed bank and the ensuing vegetation are rare. Here, we studied the dynamics in plant communities with high dominance of…

Populations and Evolution · Quantitative Biology 2023-01-31 Niv DeMalach , Jaime Kigel , Marcelo Sternberg

Plants rarely occur in isolated systems. Bacteria can inhabit either the endosphere, the region inside the plant root, or the rhizosphere, the soil region just outside the plant root. Our goal is to understand if using genomic data and…

Genomics · Quantitative Biology 2017-01-13 Jennifer Chien , Peter Larsen

Quantifying diversity is of central importance for the study of structure, function and evolution of microbial communities. The estimation of microbial diversity has received renewed attention with the advent of large-scale metagenomic…

Populations and Evolution · Quantitative Biology 2013-08-06 Bart Haegeman , Jérôme Hamelin , John Moriarty , Peter Neal , Jonathan Dushoff , Joshua S. Weitz

Development of either drought-resistant or drought-tolerant varieties in rice (Oryza sativa L.), especially for high yield in the context of climate change, is a crucial task across the world. The need for high yielding rice varieties is a…

This review focuses on microbiomes associated with residues within the context of other microbial habitats in cereal-producing agroecosystems such as phyllosphere or rhizosphere. We connect residue microbiome with the survival of…

Populations and Evolution · Quantitative Biology 2019-08-14 Lydie Kerdraon , Valérie Laval , Frédéric Suffert

Microbial colonies cultured on agar Petri dishes have become a model system to study biological evolution in populations expanding in space. Processes such as clonal segregation and gene surfing have been shown to be affected by…

Populations and Evolution · Quantitative Biology 2018-10-17 Craig Watson , Paul Hush , Joshua Williams , Angela Dawson , Nikola Ojkic , Simon Titmuss , Bartlomiej Waclaw

Excessive evaporative loss of water from the topsoil in arid-land agriculture is compensated via irrigation, which exploits massive freshwater resources. The cumulative effects of decades of unsustainable freshwater consumption in many arid…

Environmental stresses such as drought and heat can cause substantial yield loss in agriculture. As such, hybrid crops that are tolerant to drought and heat stress would produce more consistent yields compared to the hybrids that are not…

Machine Learning · Computer Science 2019-12-06 Saeed Khaki , Zahra Khalilzadeh , Lizhi Wang

Premise of the Study: Impatiens is a commonly seen garden flower, renowned for its strong adaptability and long history of cultivation. However, seldom has any research touched on its physiological resistance mechanism. In this experiment,…

Other Quantitative Biology · Quantitative Biology 2016-11-15 Xue Lan Liao , Guo Qin Wen , Qing Lin Liu , Xue Yang Li Meng Xi Wu , Yuan Zhi Pan

DNA methylation can be associated with phenotypic plasticity, yet how temperature shapes DNA methylation diversity in natural populations is unclear. Analyzing whole-genome bisulfite sequencing from 1075 Arabidopsis thaliana accessions…

Genomics · Quantitative Biology 2025-11-04 Eylul Gokce Harputluoglu , Ueli Grossniklaus , Deepak Kumar Tanwar

The rise of complex multicellular ecosystems Neoproterozoic time was preceded by a microbial Proterozoic biosphere, where productivity may have been largely restricted to microbial mats made up of bacteria including oxygenic photosynthetic…

Genomics · Quantitative Biology 2024-12-03 Beatrice Tauer , Elizabeth Trembath-Reichert , L. M. Ward

Budding and grafting are the strategies employed to combat unfavorable environmental conditions and improve some physiological defects in the Pistacia vera tree. Drought and salinity stresses are the most prominent adverse conditions…

Other Quantitative Biology · Quantitative Biology 2024-02-26 Aram Akram Mohammed , Fakhraddin Mustafa Hama Salih

Indoor microbial diversity and composition are suggested to affect the prevalence and severity of asthma. In this study, we collected floor dust and environmental characteristics from 21 classrooms, and health data related to asthma…

Fescue toxicity causes reduced growth and reproductive issues in cattle grazing endophyte-infected tall fescue. To characterize the gut microbiota and its response to fescue toxicosis, we collected fecal samples before and after a 30-days…

Genomics · Quantitative Biology 2024-07-09 Yihang Zhou

Ecological theory predicts that the soil seed bank stabilises the composition of annual plant communities in the face of environmental variability. However, long-term data on the community dynamics in the seed bank and the standing…

Populations and Evolution · Quantitative Biology 2021-03-09 Niv DeMalach , Jaime Kigel , Marcelo Sternberg

Seagrass meadows play an essential role in blue carbon and aquatic ecosystem services. However, methods for the flourishing of seagrass are still being explored. Here, data from 49 public coastal surveys on the distribution of seagrass and…

Evolutionary experiments with microbes are a powerful tool to study mutations and natural selection. These experiments, however, are often limited to the well-mixed environments of a test tube or a chemostat. Since spatial organization can…

Populations and Evolution · Quantitative Biology 2012-05-02 Kirill S Korolev , Melanie J I Müller , Nilay Karahan , Andrew W Murray , Oskar Hallatschek , David R Nelson

The diversity of the arthropod fauna from the pacific coast in southern Mexico was investigated in order to study and compare the biodiversity of two different regions. One is located within the Biosphere reserve "La encrucijada" and the…

Populations and Evolution · Quantitative Biology 2014-05-02 Solórzano Kraemer Mónica Morayma , Kraemer Atahualpa S. , Stebner Frauke

Microbial communities routinely have several alternative stable states observed for the same environmental parameters. Sudden and irreversible transitions between these states make external manipulation of these systems more complicated. To…

Populations and Evolution · Quantitative Biology 2018-10-12 Veronika Dubinkina , Yulia Fridman , Parth Pandey , Sergei Maslov

Related groups of microbes are widely distributed across Earth's habitats, implying numerous dispersal and adaptation events over evolutionary time. However, to date, relatively little is known about the characteristics and mechanisms of…

Populations and Evolution · Quantitative Biology 2023-02-02 Alexander L. Jaffe , Cindy J. Castelle , Jillian F. Banfield
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