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In this paper, we provide a novel way to generate low dimensional vector embeddings for the noun and verb synsets in WordNet, where the hypernym-hyponym relationship is preserved in the embeddings. We call this embedding the Sense Spectrum…

Computation and Language · Computer Science 2022-06-14 Canlin Zhang , Xiuwen Liu

Retrieval-augmented generation (RAG) for biomedical knowledge faces a hierarchy-aware ontology grounding challenge: resources like HPO, DO, and MeSH use deep ``is-a" taxonomies, yet production stacks rely on Euclidean embeddings and ANN…

Information Retrieval · Computer Science 2026-04-14 Ou Deng , Shoji Nishimura , Atsushi Ogihara , Qun Jin

Language models are increasingly applied to biological sequences like proteins and mRNA, yet their default Euclidean geometry may mismatch the hierarchical structures inherent to biological data. While hyperbolic geometry provides a better…

Machine Learning · Computer Science 2025-11-05 Max van Spengler , Artem Moskalev , Tommaso Mansi , Mangal Prakash , Rui Liao

Graph embedding is becoming an important method with applications in various areas, including social networks and knowledge graph completion. In particular, Poincar\'e embedding has been proposed to capture the hierarchical structure of…

Artificial Intelligence · Computer Science 2022-05-11 Daisuke Takehara , Kei Kobayashi

We consider the task of inferring is-a relationships from large text corpora. For this purpose, we propose a new method combining hyperbolic embeddings and Hearst patterns. This approach allows us to set appropriate constraints for…

Computation and Language · Computer Science 2019-02-05 Matt Le , Stephen Roller , Laetitia Papaxanthos , Douwe Kiela , Maximilian Nickel

Learning from graph-structured data is an important task in machine learning and artificial intelligence, for which Graph Neural Networks (GNNs) have shown great promise. Motivated by recent advances in geometric representation learning, we…

Machine Learning · Computer Science 2019-10-30 Qi Liu , Maximilian Nickel , Douwe Kiela

Lexical entailment, such as hyponymy, is a fundamental issue in the semantics of natural language. This paper proposes distributional semantic models which efficiently learn word embeddings for entailment, using a recently-proposed…

Computation and Language · Computer Science 2017-10-09 James Henderson

Word embeddings aims to map sense of the words into a lower dimensional vector space in order to reason over them. Training embeddings on domain specific data helps express concepts more relevant to their use case but comes at a cost of…

Computation and Language · Computer Science 2018-08-20 Shubham Bhardwaj

Current approaches to genomic sequence modeling often struggle to align the inductive biases of machine learning models with the evolutionarily-informed structure of biological systems. To this end, we formulate a novel application of…

Machine Learning · Computer Science 2025-07-30 Raiyan R. Khan , Philippe Chlenski , Itsik Pe'er

Learning hyperbolic embeddings for knowledge graph (KG) has gained increasing attention due to its superiority in capturing hierarchies. However, some important operations in hyperbolic space still lack good definitions, making existing…

Machine Learning · Computer Science 2023-02-09 Wentao Shi , Junkang Wu , Xuezhi Cao , Jiawei Chen , Wenqiang Lei , Wei Wu , Xiangnan He

Fine-grained emotion classification (FEC) is a challenging task. Specifically, FEC needs to handle subtle nuance between labels, which can be complex and confusing. Most existing models only address text classification problem in the…

Computation and Language · Computer Science 2023-06-27 Chih-Yao Chen , Tun-Min Hung , Yi-Li Hsu , Lun-Wei Ku

Graph embedding is a transformation of nodes of a network into a set of vectors. A good embedding should capture the underlying graph topology and structure, node-to-node relationship, and other relevant information about the graph, its…

Social and Information Networks · Computer Science 2021-12-02 Bogumił Kamiński , Łukasz Kraiński , Paweł Prałat , François Théberge

Euclidean word embedding models such as GloVe and Word2Vec have been shown to reflect human-like gender biases. In this paper, we extend the study of gender bias to the recently popularized hyperbolic word embeddings. We propose gyrocosine…

Computation and Language · Computer Science 2021-09-29 Vaibhav Kumar , Tenzin Singhay Bhotia , Vaibhav Kumar , Tanmoy Chakraborty

Representing graphs as sets of node embeddings in certain curved Riemannian manifolds has recently gained momentum in machine learning due to their desirable geometric inductive biases, e.g., hierarchical structures benefit from hyperbolic…

Machine Learning · Computer Science 2020-06-09 Calin Cruceru , Gary Bécigneul , Octavian-Eugen Ganea

Recent studies have experimentally shown that we can achieve in non-Euclidean metric space effective and efficient graph embedding, which aims to obtain the vertices' representations reflecting the graph's structure in the metric space.…

Machine Learning · Statistics 2023-05-16 Atsushi Suzuki , Atsushi Nitanda , Taiji Suzuki , Jing Wang , Feng Tian , Kenji Yamanishi

In this paper, we present a method of embedding physics data manifolds with metric structure into lower dimensional spaces with simpler metrics, such as Euclidean and Hyperbolic spaces. We then demonstrate that it can be a powerful step in…

High Energy Physics - Phenomenology · Physics 2023-08-02 Sang Eon Park , Philip Harris , Bryan Ostdiek

Image classification has been studied extensively, but there has been limited work in using unconventional, external guidance other than traditional image-label pairs for training. We present a set of methods for leveraging information…

Computer Vision and Pattern Recognition · Computer Science 2020-04-28 Ankit Dhall , Anastasia Makarova , Octavian Ganea , Dario Pavllo , Michael Greeff , Andreas Krause

A new development in NLP is the construction of hyperbolic word embeddings. As opposed to their Euclidean counterparts, hyperbolic embeddings are represented not by vectors, but by points in hyperbolic space. This makes the most common…

Embedding into hyperbolic space is emerging as an effective representation technique for datasets that exhibit hierarchical structure. This development motivates the need for algorithms that are able to effectively extract knowledge and…

Data Structures and Algorithms · Computer Science 2020-09-03 Xian Wu , Moses Charikar

Clustering, as an unsupervised technique, plays a pivotal role in various data analysis applications. Among clustering algorithms, Spectral Clustering on Euclidean Spaces has been extensively studied. However, with the rapid evolution of…

Machine Learning · Computer Science 2024-12-09 Sagar Ghosh , Swagatam Das
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