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In this paper, we detail our submission to the 2019, 7th year, BioASQ competition. We present our approach for Task-7b, Phase B, Exact Answering Task. These Question Answering (QA) tasks include Factoid, Yes/No, List Type Question…

Computation and Language · Computer Science 2020-02-07 Sai Krishna Telukuntla , Aditya Kapri , Wlodek Zadrozny

The recent success of question answering systems is largely attributed to pre-trained language models. However, as language models are mostly pre-trained on general domain corpora such as Wikipedia, they often have difficulty in…

Computation and Language · Computer Science 2019-09-19 Wonjin Yoon , Jinhyuk Lee , Donghyeon Kim , Minbyul Jeong , Jaewoo Kang

Biomedical question answering (QA) is a challenging task due to the scarcity of data and the requirement of domain expertise. Pre-trained language models have been used to address these issues. Recently, learning relationships between…

Computation and Language · Computer Science 2021-02-18 Minbyul Jeong , Mujeen Sung , Gangwoo Kim , Donghyeon Kim , Wonjin Yoon , Jaehyo Yoo , Jaewoo Kang

Pre-training a transformer-based model for the language modeling task in a large dataset and then fine-tuning it for downstream tasks has been found very useful in recent years. One major advantage of such pre-trained language models is…

Computation and Language · Computer Science 2020-11-17 Md Tahmid Rahman Laskar , Enamul Hoque , Jimmy Xiangji Huang

Contemporary question answering (QA) systems, including transformer-based architectures, suffer from increasing computational and model complexity which render them inefficient for real-world applications with limited resources. Further,…

This paper describes our submission to the 2017 BioASQ challenge. We participated in Task B, Phase B which is concerned with biomedical question answering (QA). We focus on factoid and list question, using an extractive QA model, that is,…

Computation and Language · Computer Science 2017-06-28 Georg Wiese , Dirk Weissenborn , Mariana Neves

Question Answering (QA) is a task in natural language processing that has seen considerable growth after the advent of transformers. There has been a surge in QA datasets that have been proposed to challenge natural language processing…

Computation and Language · Computer Science 2021-10-08 Kate Pearce , Tiffany Zhan , Aneesh Komanduri , Justin Zhan

The availability of biomedical text data and advances in natural language processing (NLP) have made new applications in biomedical NLP possible. Language models trained or fine tuned using domain specific corpora can outperform general…

Computation and Language · Computer Science 2021-07-12 Usman Naseem , Adam G. Dunn , Matloob Khushi , Jinman Kim

We study the effect of seven data augmentation (da) methods in factoid question answering, focusing on the biomedical domain, where obtaining training instances is particularly difficult. We experiment with data from the BioASQ challenge,…

Computation and Language · Computer Science 2022-04-12 Dimitris Pappas , Prodromos Malakasiotis , Ion Androutsopoulos

In response to the Kaggle's COVID-19 Open Research Dataset (CORD-19) challenge, we have proposed three transformer-based question-answering systems using BERT, ALBERT, and T5 models. Since the CORD-19 dataset is unlabeled, we have evaluated…

Computation and Language · Computer Science 2021-01-28 Hillary Ngai , Yoona Park , John Chen , Mahboobeh Parsapoor

The recent trend in industry-setting Natural Language Processing (NLP) research has been to operate large %scale pretrained language models like BERT under strict computational limits. While most model compression work has focused on…

Computation and Language · Computer Science 2021-04-13 J. S. McCarley , Rishav Chakravarti , Avirup Sil

We present 3 different question-answering models trained on the SQuAD2.0 dataset -- BIDAF, DocumentQA and ALBERT Retro-Reader -- demonstrating the improvement of language models in the past three years. Through our research in fine-tuning…

Computation and Language · Computer Science 2021-05-04 Marshall Ho , Zhipeng Zhou , Judith He

We explore the suitability of unsupervised representation learning methods on biomedical text -- BioBERT, SciBERT, and BioSentVec -- for biomedical question answering. To further improve unsupervised representations for biomedical QA, we…

Computation and Language · Computer Science 2020-09-29 Vaishnavi Kommaraju , Karthick Gunasekaran , Kun Li , Trapit Bansal , Andrew McCallum , Ivana Williams , Ana-Maria Istrate

Machine question answering is an essential yet challenging task in natural language processing. Recently, Pre-trained Contextual Embeddings (PCE) models like Bidirectional Encoder Representations from Transformers (BERT) and A Lite BERT…

Computation and Language · Computer Science 2021-10-20 Shilun Li , Renee Li , Veronica Peng

Factoid question answering (QA) has recently benefited from the development of deep learning (DL) systems. Neural network models outperform traditional approaches in domains where large datasets exist, such as SQuAD (ca. 100,000 questions)…

Computation and Language · Computer Science 2017-06-16 Georg Wiese , Dirk Weissenborn , Mariana Neves

We introduce a new language representation model called BERT, which stands for Bidirectional Encoder Representations from Transformers. Unlike recent language representation models, BERT is designed to pre-train deep bidirectional…

Computation and Language · Computer Science 2019-05-28 Jacob Devlin , Ming-Wei Chang , Kenton Lee , Kristina Toutanova

Pretrained transformer-based language models have achieved state of the art across countless tasks in natural language processing. These models are highly expressive, comprising at least a hundred million parameters and a dozen layers.…

Computation and Language · Computer Science 2019-11-11 Jaejun Lee , Raphael Tang , Jimmy Lin

Recent advancements in transformer-based language models have sparked research into their logical reasoning capabilities. Most of the benchmarks used to evaluate these models are simple: generated from short (fragments of) first-order logic…

Computation and Language · Computer Science 2024-10-15 Angelos Poulis , Eleni Tsalapati , Manolis Koubarakis

Biomedical literature is a rapidly expanding field of science and technology. Classification of biomedical texts is an essential part of biomedicine research, especially in the field of biology. This work proposes the fine-tuned DistilBERT,…

Computation and Language · Computer Science 2024-04-23 Ziqing Guo

Transformer-based masked language models such as BERT, trained on general corpora, have shown impressive performance on downstream tasks. It has also been demonstrated that the downstream task performance of such models can be improved by…

Computation and Language · Computer Science 2023-05-04 Zhi Hong , Aswathy Ajith , Gregory Pauloski , Eamon Duede , Kyle Chard , Ian Foster
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