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Multimodal medical information processing is currently the epicenter of intense interdisciplinary research, as proper data fusion may lead to more accurate diagnoses. Moreover, multimodality may disambiguate cases of co-morbidity. This…

Information Retrieval · Computer Science 2017-02-23 Georgios Drakopoulos , Vasileios Megalooikonomou

This paper proposes a visual analytics framework that addresses the complex user interactions required through a command-line interface to run analyses in distributed data analysis systems. The visual analytics framework facilitates the…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-11-12 Abdullah-Al-Raihan Nayeem , Mohammed Elshambakey , Todd Dobbs , Huikyo Lee , Daniel Crichton , Yimin Zhu , Chanachok Chokwitthaya , William J. Tolone , Isaac Cho

The overview-driven visual analysis of large-scale dynamic graphs poses a major challenge. We propose Multiscale Snapshots, a visual analytics approach to analyze temporal summaries of dynamic graphs at multiple temporal scales. First, we…

Human-Computer Interaction · Computer Science 2020-09-17 Eren Cakmak , Udo Schlegel , Dominik Jäckle , Daniel Keim , Tobias Schreck

Systematic scientometric reviews, empowered by scientometric and visual analytic techniques, offer opportunities to improve the timeliness, accessibility, and reproducibility of conventional systematic reviews. While increasingly accessible…

Digital Libraries · Computer Science 2020-12-24 Chaomei Chen , Min Song

Multiplexed immunofluorescence provides an unprecedented opportunity for studying specific cell-to-cell and cell microenvironment interactions. We employ graph neural networks to combine features obtained from tissue morphology with…

The increasing complexity and scale of scientific datasets demand advanced tools for efficient discovery and exploration. Traditional search systems often fall short in addressing the multidimensional nature of data and their intricate…

Databases · Computer Science 2025-09-04 Pawandeep Kaur Betz , Tobias Hecking , Andreas Gerndt

Shape graphs are complex geometrical structures commonly found in biological and anatomical systems. A shape graph is a collection of nodes, some connected by curvilinear edges with arbitrary shapes. Their high complexity stems from the…

Computation · Statistics 2024-09-17 Benjamin Beaudett , Anuj Srivastava

The term life sciences refers to the disciplines that study living organisms and life processes, and include chemistry, biology, medicine, and a range of other related disciplines. Research efforts in life sciences are heavily data-driven,…

Knowledge Graphs have been one of the fundamental methods for integrating heterogeneous data sources. Integrating heterogeneous data sources is crucial, especially in the biomedical domain, where central data-driven tasks such as drug…

Machine Learning · Computer Science 2020-12-22 Islam Akef Ebeid , Majdi Hassan , Tingyi Wanyan , Jack Roper , Abhik Seal , Ying Ding

With the rapid adoption of machine learning techniques for large-scale applications in science and engineering comes the convergence of two grand challenges in visualization. First, the utilization of black box models (e.g., deep neural…

Objective: Disease knowledge graphs are a way to connect, organize, and access disparate information about diseases with numerous benefits for artificial intelligence (AI). To create knowledge graphs, it is necessary to extract knowledge…

Machine Learning · Computer Science 2022-09-01 Yucong Lin , Keming Lu , Sheng Yu , Tianxi Cai , Marinka Zitnik

We present an interactive visualization of the Cell Map for AI Talent Knowledge Graph (CM4AI TKG), a detailed semantic space comprising approximately 28,000 experts and 1,000 datasets focused on the biomedical field. Our tool leverages…

Social and Information Networks · Computer Science 2025-01-20 Jiawei Xu , Zhandos Sembay , Swathi Thaker , Pamela Payne-Foster , Jake Yue Chen , Ying Ding

Analysis of large dynamic networks is a thriving research field, typically relying on 2D graph representations. The advent of affordable head mounted displays however, sparked new interest in the potential of 3D visualization for immersive…

Human-Computer Interaction · Computer Science 2020-09-11 Johannes Sorger , Manuela Waldner , Wolfgang Knecht , Alessio Arleo

In this paper we describe a system for visualizing and analyzing worldwide research topics, {\tt rtopmap}. We gather data from google scholar academic research profiles, putting together a weighted topics graph, consisting of over 35,000…

Information Retrieval · Computer Science 2017-06-16 Md Iqbal Hossain , Stephen Kobourov

The establishment of links between data (e.g., patient records) and Web resources (e.g., literature) and the proper visualization of such discovered knowledge is still a challenge in most Life Science domains (e.g., biomedicine). In this…

Information Retrieval · Computer Science 2010-12-09 R. Berlanga , E. Jimenez-Ruiz , V. Nebot

There is a growing trend of applying machine learning methods to medical datasets in order to predict patients' future status. Although some of these methods achieve high performance, challenges still exist in comparing and evaluating…

Medical Physics · Physics 2020-03-25 Yiran Li , Takanori Fujiwara , Yong K. Choi , Katherine K. Kim , Kwan-Liu Ma

Medical deep learning models depend heavily on domain-specific knowledge to perform well on knowledge-intensive clinical tasks. Prior work has primarily leveraged unimodal knowledge graphs, such as the Unified Medical Language System…

Artificial Intelligence · Computer Science 2025-05-26 Xiaochen Wang , Yuan Zhong , Lingwei Zhang , Lisong Dai , Ting Wang , Fenglong Ma

Human reasoning in visual analytics of data networks relies mainly on the quality of visual perception and the capability of interactively exploring the data from different facets. Visual quality strongly depends on networks' size and…

Human-Computer Interaction · Computer Science 2017-12-13 Adam Agocs , Dimitrios Dardanis , Jean-Marie Le Goff , Dimitrios Proios

Knowledge graphs are an efficient method for representing and connecting information across various concepts, useful in reasoning, question answering, and knowledge base completion tasks. They organize data by linking points, enabling…

Artificial Intelligence · Computer Science 2025-02-25 Saher Mohamed , Kirollos Farah , Abdelrahman Lotfy , Kareem Rizk , Abdelrahman Saeed , Shahenda Mohamed , Ghada Khouriba , Tamer Arafa

Digital libraries provide different access paths, allowing users to explore their collections. For instance, paper recommendation suggests literature similar to some selected paper. Their implementation is often cost-intensive, especially…

Information Retrieval · Computer Science 2024-12-23 Hermann Kroll , Christin K. Kreutz , Bill Matthias Thang , Philipp Schaer , Wolf-Tilo Balke