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In this paper, a computationally efficient data-driven hybrid automaton model is proposed to capture unknown complex dynamical system behaviors using multiple neural networks. The sampled data of the system is divided by valid partitions…

Systems and Control · Electrical Eng. & Systems 2023-04-28 Yejiang Yang , Zihao Mo , Weiming Xiang

Disordered proteins play essential roles in myriad cellular processes, yet their structural characterization remains a major challenge due to their dynamic and heterogeneous nature. We here present a community-driven initiative to address…

We propose a method for learning cyclic causal models from a combination of observational and interventional equilibrium data. Novel aspects of the proposed method are its ability to work with continuous data (without assuming linearity)…

Machine Learning · Computer Science 2013-09-27 Joris Mooij , Tom Heskes

Reliable predictions from systems biology models require knowing whether parameters can be estimated from available data, and with what certainty. Identifiability analysis reveals whether parameters are learnable in principle (structural…

In the age of social computing, finding interesting network patterns or motifs is significant and critical for various areas such as decision intelligence, intrusion detection, medical diagnosis, social network analysis, fake news…

Social and Information Networks · Computer Science 2022-04-07 Shuo Yu , Feng Xia , Yuchen Sun , Tao Tang , Xiaoran Yan , Ivan Lee

Systems biology models are useful models of complex biological systems that may require a large amount of experimental data to fit each model's parameters or to approximate a likelihood function. These models range from a few to thousands…

Quantitative Methods · Quantitative Biology 2024-07-12 Vincent D. Zaballa , Elliot E. Hui

Chronotypes allow for comparisons of one individual's daily rhythms to that of others and the environment. Mismatch between an individual's chronotype and the timing constraints of their social environment create social jet lag, which is…

Other Quantitative Biology · Quantitative Biology 2025-03-03 Sourabh Gapate , Royan Kamyar , Benjamin Smarr

Many real-world dynamic systems, both natural and artificial, are understood to be performing computations. For artificial dynamic systems, explicitly designed to perform computation - such as digital computers - by construction, we can…

Computational Physics · Physics 2026-02-24 David H. Wolpert , Jan Korbel

When modeling longitudinal biomedical data, often dimensionality reduction as well as dynamic modeling in the resulting latent representation is needed. This can be achieved by artificial neural networks for dimension reduction, and…

Machine Learning · Statistics 2023-12-01 Göran Köber , Raffael Kalisch , Lara Puhlmann , Andrea Chmitorz , Anita Schick , Harald Binder

We demonstrate that the algorithmic information content of a system is deeply connected to its potential dynamics, thus affording an avenue for moving systems in the information-theoretic space and controlling them in the phase space. To…

Other Quantitative Biology · Quantitative Biology 2018-04-06 Hector Zenil , Narsis A. Kiani , Francesco Marabita , Yue Deng , Szabolcs Elias , Angelika Schmidt , Gordon Ball , Jesper Tegnér

Computer systems can be found everywhere: in space, in our homes, in our cars, in our pockets, and sometimes even in our own bodies. For concerns of safety, economy, and convenience, it is important that such systems work correctly.…

Logic in Computer Science · Computer Science 2019-05-22 Mathias Ruggaard Pedersen

Temporal networks of face-to-face interactions between individuals are useful proxies of the dynamics of social systems on fast time scales. Several empirical statistical properties of these networks have been shown to be robust across a…

Physics and Society · Physics 2023-02-03 Didier Le Bail , Mathieu Génois , Alain Barrat

We develop a method for learning periodic tasks from visual demonstrations. The core idea is to leverage periodicity in the policy structure to model periodic aspects of the tasks. We use active learning to optimize parameters of rhythmic…

Robotics · Computer Science 2022-05-23 Jingyun Yang , Junwu Zhang , Connor Settle , Akshara Rai , Rika Antonova , Jeannette Bohg

Physiological signals can potentially be applied as objective measures to understand the behavior and engagement of users interacting with information access systems. However, the signals are highly sensitive, and many controls are required…

Information Retrieval · Computer Science 2023-04-27 Kaixin Ji , Damiano Spina , Danula Hettiachchi , Flora Dilys Salim , Falk Scholer

Existing AI systems for modeling human behavior operate at the level of individuals or detect events after they occur. As a result, they systematically fail to capture the collective dynamics that determine whether a group remains stable or…

Artificial Intelligence · Computer Science 2026-05-14 Helene Malyutina

Within the diverse interdisciplinary life sciences domains, semantic, workflow, and methodological ambiguities can prevent the appreciation of explanations of phenomena, handicap the use of computational models, and hamper communication…

Quantitative Methods · Quantitative Biology 2018-01-16 C. Anthony Hunt , Ahmet Erdemir , Feilim Mac Gabhann , William W. Lytton , Edward A. Sander , Mark K. Transtrum , Lealem Mulugeta

Successful human-robot teaming will require robots to adapt autonomously to a human teammate's internal state, where a critical element of such adaptation is the ability to estimate the human's workload in unknown situations. Existing…

Robotics · Computer Science 2025-07-11 Josh Bhagat Smith , Julie A. Adams

First-principles-based modelings have been extremely successful in providing crucial insights and predictions for complex biological functions and phenomena. However, they can be hard to build and expensive to simulate for complex living…

Adaptation and Self-Organizing Systems · Physics 2024-11-26 Ruilin Zhang , Zhongyi Wang , Tianyi Wu , Yuhang Cai , Louis Tao , Zhuo-Cheng Xiao , Yao Li

Anomaly detection is a well-established field in machine learning, identifying observations that deviate from typical patterns. The principles of anomaly detection could enhance our understanding of how biological systems recognize and…

Populations and Evolution · Quantitative Biology 2025-10-30 Steven A. Frank

Uncertain data streams have been widely generated in many Web applications. The uncertainty in data streams makes anomaly detection from sensor data streams far more challenging. In this paper, we present a novel framework that supports…

Artificial Intelligence · Computer Science 2016-07-21 Jiangang Ma , Le Sun , Hua Wang , Yanchun Zhang , Uwe Aickelin