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Computational topologists recently developed a method, called persistent homology to analyze data presented in terms of similarity or dissimilarity. Indeed, persistent homology studies the evolution of topological features in terms of a…

Quantitative Methods · Quantitative Biology 2017-08-01 Pavel Petrov , Stephen T Rush , Zhichun Zhai , Christine H Lee , Peter T Kim , Giseon Heo

In this paper, we present our first proposal of a machine learning system for the classification of freshwater snails of the genus Radomaniola. We elaborate on the specific challenges encountered during system design, and how we tackled…

Computer Vision and Pattern Recognition · Computer Science 2024-07-31 Dennis Vetter , Muhammad Ahsan , Diana Delicado , Thomas A. Neubauer , Thomas Wilke , Gemma Roig

The neonatal period is critical for survival, requiring accurate and early identification to enable timely interventions such as vaccinations, HIV treatment, and nutrition programs. Biometric solutions offer potential for child protection…

Computer Vision and Pattern Recognition · Computer Science 2025-04-30 Luiz F. P. Southier , Marcelo Filipak , Luiz A. Zanlorensi , Ildefonso Wasilevski , Fabio Favarim , Jefferson T. Oliva , Marcelo Teixeira , Dalcimar Casanova

The structural analysis of shape boundaries leads to the characterization of objects as well as to the understanding of shape properties. The literature on graphs and networks have contributed to the structural characterization of shapes…

Computer Vision and Pattern Recognition · Computer Science 2017-11-15 Gisele H. B. Miranda , Jeaneth Machicao , Odemir M. Bruno

In this work we propose an approach to select the classification method and features, based on the state-of-the-art, with best performance for diagnostic support through peripheral blood smear images of red blood cells. In our case we used…

Machine Learning · Computer Science 2020-10-12 Nataša Petrović , Gabriel Moyà-Alcover , Antoni Jaume-i-Capó , Manuel González-Hidalgo

Different cell types aggregate and sort into hierarchical architectures during the formation of animal tissues. The resulting spatial organization depends (in part) on the strength of adhesion of one cell type to itself relative to other…

Quantitative Methods · Quantitative Biology 2023-08-02 Dhananjay Bhaskar , William Y. Zhang , Alexandria Volkening , Björn Sandstede , Ian Y. Wong

Overweight and obesity have emerged as widespread societal challenges, frequently linked to unhealthy eating patterns. A promising approach to enhance dietary monitoring in everyday life involves automated detection of food intake gestures.…

Computer Vision and Pattern Recognition · Computer Science 2025-04-16 Chunzhuo Wang , Zhewen Xue , T. Sunil Kumar , Guido Camps , Hans Hallez , Bart Vanrumste

Many animals, modern aircraft, and underwater vehicles use streamlined body shapes that reduce fluid dynamic drag to achieve fast and effective locomotion in air and water. Similarly, numerous small terrestrial animals move through…

Biological Physics · Physics 2025-09-16 Chen Li , Andrew O. Pullin , Duncan W. Haldane , Han K. Lam , Ronald S. Fearing , Robert J. Full

This paper examines the challenges and advancements in recognizing seals within their natural habitats using conventional photography, underscored by the emergence of machine learning technologies. We used the leopard seal, \emph{Hydrurga…

Computer Vision and Pattern Recognition · Computer Science 2024-08-15 Jorge Yero Salazar , Pablo Rivas , Renato Borras-Chavez , Sarah Kienle

Real world network datasets often contain a wealth of complex topological information. In the face of these data, researchers often employ methods to extract reduced networks containing the most important structures or pathways, sometimes…

Physics and Society · Physics 2014-02-19 Louis M. Shekhtman , James P. Bagrow , Dirk Brockmann

Microbial identification is a central issue in microbiology, in particular in the fields of infectious diseases diagnosis and industrial quality control. The concept of species is tightly linked to the concept of biological and clinical…

Machine Learning · Statistics 2015-06-25 Kévin Vervier , Pierre Mahé , Jean-Baptiste Veyrieras , Jean-Philippe Vert

Tendrils coil their shape to anchor the plant to supporting structures, allowing vertical growth toward light. Although climbing plants have been studied for a long time, extracting information regarding the relationship between the…

Robotics · Computer Science 2025-11-18 Jie Fan , Francesco Visentin , Barbara Mazzolai , Emanuela Del Dottore

Statistical shape analysis is a very useful tool in a wide range of medical and biological applications. However, it typically relies on the ability to produce a relatively small number of features that can capture the relevant variability…

Computer Vision and Pattern Recognition · Computer Science 2020-06-16 Riddhish Bhalodia , Ladislav Kavan , Ross Whitaker

This paper explores the automated analysis of palmar features using machine learning techniques. We present a computer vision pipeline that extracts key characteristics from palm images, such as principal line structures, texture, and shape…

Computer Vision and Pattern Recognition · Computer Science 2025-09-03 Shweta Patil

Accurate information on the distribution of vegetation species is used as a proxy for the health of an ecosystem, a currency of international environmental treaties, and a necessary planning tool for forest preservation and rehabilitation,…

Methodology · Statistics 2023-09-20 Henry Scharf , Jonathan Schierbaum , Hana Matsumoto , Tim Assal

The tongue surface houses a range of papillae that are integral to the mechanics and chemistry of taste and textural sensation. Although gustatory function of papillae is well investigated, the uniqueness of papillae within and across…

Machine Learning · Computer Science 2023-12-15 Rayna Andreeva , Anwesha Sarkar , Rik Sarkar

We introduce a data-driven fractional modeling framework aimed at complex materials, and particularly bio-tissues. From multi-step relaxation experiments of distinct anatomical locations of porcine urinary bladder, we identify an anomalous…

Numerical Analysis · Mathematics 2021-10-04 Jorge L. Suzuki , Tyler G. Tuttle , Sara Roccabianca , Mohsen Zayernouri

Constructing mechanistic models of neural circuits is a fundamental goal of neuroscience, yet verifying such models is limited by the lack of ground truth. To rigorously test model discovery, we establish an in silico testbed using…

Neurons and Cognition · Quantitative Biology 2026-02-05 Jan-Matthis Lueckmann , Viren Jain , Michał Januszewski

Current alignment-based methods for classification in geometric morphometrics do not generally address the classification of new individuals that were not part of the study sample. However, in the context of infant and child nutritional…

Applications · Statistics 2026-01-23 Laura Medialdea , Ana Arribas-Gil , Álvaro Pérez-Romero , Amador Gómez

Recent studies of animal social networks have significantly increased our understanding of animal behavior, social interactions, and many important ecological and epidemiological processes. However, most of the studies are at low temporal…

Populations and Evolution · Quantitative Biology 2017-02-08 Shi Chen , Amiyaal Ilany , Brad J. White , Michael W. Sanderson , Cristina Lanzas