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Network motifs are overrepresented interconnection patterns found in real-world networks. What functional advantages may they offer for building complex systems? We show that most network motifs emerge from interconnections patterns that…

Systems and Control · Computer Science 2014-11-21 Marco Tulio Angulo , Yang-Yu Liu , Jean-Jacques Slotine

Despite their apparent simplicity, random Boolean networks display a rich variety of dynamical behaviors. Much work has been focused on the properties and abundance of attractors. We here derive an expression for the number of attractors in…

Molecular Networks · Quantitative Biology 2007-05-23 Björn Samuelsson , Carl Troein

A class of random graphs is introduced and studied. The graphs are constructed in an algorithmic way from five motifs which were found in [Milo R., Shen-Orr S., Itzkovitz S., Kashtan N., Chklovskii D., Alon U., Science, 2002, 298, 824-827].…

Mathematical Physics · Physics 2011-06-23 M. Kotorowicz , Yu. Kozitsky

Learning a task induces connectivity changes in neural circuits, thereby changing their dynamics. To elucidate task related neural dynamics we study trained Recurrent Neural Networks. We develop a Mean Field Theory for Reservoir Computing…

Neurons and Cognition · Quantitative Biology 2017-06-28 Alexander Rivkind , Omri Barak

Complex networks evolve and vary their structure as time goes by. In particular, the links in those networks have both a sign and a directionality. To understand their structural principles, we measure the network motifs, which are patterns…

Physics and Society · Physics 2023-06-28 Youngjai Park , Mi Jin Lee , Seung-Woo Son

Graph Neural Networks (GNNs) are known to match the distinguishing power of the 1-Weisfeiler-Lehman (1-WL) test, and the resulting partitions coincide with the unfolding tree equivalence classes of graphs. Preserving this equivalence, GNNs…

Machine Learning · Computer Science 2025-08-26 Silvia Beddar-Wiesing , Alice Moallemy-Oureh

We study the stable attractors of a class of continuous dynamical systems that may be idealized as networks of Boolean elements, with the goal of determining which Boolean attractors, if any, are good approximations of the attractors of…

Molecular Networks · Quantitative Biology 2009-11-13 Johannes Norrell , Björn Samuelsson , Joshua E. S. Socolar

This paper looks at the task of network topology inference, where the goal is to learn an unknown graph from nodal observations. One of the novelties of the approach put forth is the consideration of prior information about the density of…

Signal Processing · Electrical Eng. & Systems 2022-07-12 Samuel Rey , T. Mitchell Roddenberry , Santiago Segarra , Antonio G. Marques

It is shown that the time-averaged dynamics of memristors and their networks periodically driven by alternating-polarity pulses may converge to fixed-point attractors. Starting with a general memristive system model, we derive basic…

Chaotic Dynamics · Physics 2019-09-18 Y. V. Pershin , V. A. Slipko

Neural circuits in the brain perform a variety of essential functions, including input classification, pattern completion, and the generation of rhythms and oscillations that support processes such as breathing and locomotion. There is also…

Neurons and Cognition · Quantitative Biology 2024-10-16 Juliana Londono Alvarez

The recently introduced continuous Hopfield network (see Ramsauer et al.) exhibits large memorization capabilities, which manifest as attractive fixed points of its update rule -- a differentiable function consisting of two linear mappings…

Dynamical Systems · Mathematics 2026-04-06 Hans-Peter Beise

This paper aims to theoretically prove by applying Marotto's Theorem that both transiently chaotic neural networks (TCNN) and discrete-time recurrent neural networks (DRNN) have chaotic structure. A significant property of TCNN and DRNN is…

chao-dyn · Physics 2009-10-30 Luonan Chen , Kazuyuki Aihara

Neural dynamical systems with stable attractor structures, such as point attractors and continuous attractors, are hypothesized to underlie meaningful temporal behavior that requires working memory. However, working memory may not support…

Neurons and Cognition · Quantitative Biology 2023-08-25 Il Memming Park , Ábel Ságodi , Piotr Aleksander Sokół

The graph structure is a commonly used data storage mode, and it turns out that the low-dimensional embedded representation of nodes in the graph is extremely useful in various typical tasks, such as node classification, link prediction ,…

Social and Information Networks · Computer Science 2020-08-03 Xing Li , Wei Wei , Xiangnan Feng , Xue Liu , Zhiming Zheng

We introduce a method to find network motifs in knowledge graphs. Network motifs are useful patterns or meaningful subunits of the graph that recur frequently. We extend the common definition of a network motif to coincide with a basic…

Machine Learning · Statistics 2021-04-19 Peter Bloem

Temporal graphs are widely used to model dynamic systems with time-varying interactions. In real-world scenarios, the underlying mechanisms of generating future interactions in dynamic systems are typically governed by a set of recurring…

Machine Learning · Computer Science 2023-10-31 Jialin Chen , Rex Ying

We propose a family of models to study the evolution of ties in a network of interacting agents by reinforcement and penalization of their connections according to certain local laws of interaction. The family of stochastic dynamical…

Physics and Society · Physics 2016-06-01 Augusto Almeida Santos , Soummya Kar , Ramayya Krishnan , José M. F. Moura

Networks are a fundamental tool for modeling complex systems in a variety of domains including social and communication networks as well as biology and neuroscience. Small subgraph patterns in networks, called network motifs, are crucial to…

Social and Information Networks · Computer Science 2018-01-08 Ashwin Paranjape , Austin R. Benson , Jure Leskovec

Despite their apparent simplicity, random Boolean networks display a rich variety of dynamical behaviors. Much work has been focused on the properties and abundance of attractors. The topologies of random Boolean networks with one input per…

Disordered Systems and Neural Networks · Physics 2009-11-11 Björn Samuelsson , Carl Troein

Networks of excitatory and inhibitory (EI) neurons form a canonical circuit in the brain. Seminal theoretical results on dynamics of such networks are based on the assumption that synaptic strengths depend on the type of neurons they…

Neurons and Cognition · Quantitative Biology 2025-03-18 Yuxiu Shao , David Dahmen , Stefano Recanatesi , Eric Shea-Brown , Srdjan Ostojic