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Appropriate evaluation and experimental design are fundamental for empirical sciences, particularly in data-driven fields. Due to the successes in computational modeling of languages, for instance, research outcomes are having an…

Human-Computer Interaction · Computer Science 2022-12-21 Kostiantyn Kucher , Nicole Sultanum , Angel Daza , Vasiliki Simaki , Maria Skeppstedt , Barbara Plank , Jean-Daniel Fekete , Narges Mahyar

Drug combination therapy is a well-established strategy for disease treatment with better effectiveness and less safety degradation. However, identifying novel drug combinations through wet-lab experiments is resource intensive due to the…

Machine Learning · Computer Science 2023-01-18 Zhihang Hu , Qinze Yu , Yucheng Guo , Taifeng Wang , Irwin King , Xin Gao , Le Song , Yu Li

As the impact of AI on various scientific fields is increasing, it is crucial to embrace interdisciplinary knowledge to understand the impact of technology on society. The goal is to foster a research environment beyond disciplines that…

Drug repurposing is an effective strategy to identify new uses for existing drugs, providing the quickest possible transition from bench to bedside. Existing methods for drug repurposing that mainly focus on pre-clinical information may…

Applications · Statistics 2021-04-14 Ruoqi Liu , Lai Wei , Ping Zhang

An innovative approach to analyze the complexity of translating novel molecular entities and nanomaterials into pharmaceutical alternatives (i.e., knowledge translation, KT) is discussed. First, some key concepts on the organization and…

Social and Information Networks · Computer Science 2016-09-20 David Fajardo , Victor Castano

Scientific publications about machine learning in healthcare are often about implementing novel methods and boosting the performance - at least from a computer science perspective. However, beyond such often short-lived improvements, much…

Comparative graph and network analysis play an important role in both systems biology and pattern recognition, but existing surveys on the topic have historically ignored or underserved one or the other of these fields. We present an…

Social and Information Networks · Computer Science 2019-05-17 Emily Evans , Marissa Graham

The present work investigates the relations between amplitude and type of collaboration (intramural, extramural domestic or international) and output of specialized versus diversified research. By specialized or diversified research, we…

Digital Libraries · Computer Science 2019-05-08 Giovanni Abramo , Ciriaco Andrea D'Angelo , Flavia Di Costa

PubMed's current search interface makes it tedious to systematically search for medical and research literature on drugs that could potentially be used to treat a given pathology, including patients with genetically altered tumors. This is…

Digital Libraries · Computer Science 2024-12-18 David Massart , Marc Zeicher

To be successful, junior faculty must properly manage their time in the face of expanding responsibilities. One such responsibility is supervising undergraduate research projects. Student research projects (either single or multi-student)…

History and Overview · Mathematics 2019-07-02 Jana L. Gevertz , Peter S. Kim , Joanna R. Wares

Targeting RNA with small molecules offers significant therapeutic potential. Machine learning could substantially accelerate preclinical drug discovery, from hit identification to lead optimization. Yet a fundamental limitation emerges:…

Biomolecules · Quantitative Biology 2025-12-18 Wissam Karroucha , Carlos Oliver , Veronique Stoven , Vincent Mallet

The great behavioral heterogeneity observed between individuals with the same psychiatric disorder and even within one individual over time complicates both clinical practice and biomedical research. However, modern technologies are an…

Neurons and Cognition · Quantitative Biology 2023-05-25 Michaela Ennis

The fields of therapeutic application and drug research and development (R&D) both face substantial challenges, i.e., the therapeutic domain calls for more treatment alternatives, while numerous promising pre-clinical drugs have failed in…

Quantifying the interdisciplinarity of a research is a relevant problem in the evaluative bibliometrics. The concept of interdisciplinarity is ambiguous and multidimensional. Thus, different measures of interdisciplinarity have been propose…

Digital Libraries · Computer Science 2020-03-24 Juan María Hernández , Pablo Dorta-González

Understanding the relationship between the composition of a research team and the potential impact of their research papers is crucial as it can steer the development of new science policies for improving the research enterprise. Numerous…

Digital Libraries · Computer Science 2023-07-03 Angelo Salatino , Simone Angioni , Francesco Osborne , Diego Reforgiato Recupero , Enrico Motta

Assessing drug-target affinity is a critical step in the drug discovery and development process, but to obtain such data experimentally is both time consuming and expensive. For this reason, computational methods for predicting binding…

Machine Learning · Computer Science 2022-09-15 Elizaveta Vinogradova , Karina Pats , Ferdinand Molnár , Siamac Fazli

Segregation is a widely recognised phenomenon with profound implications for societies worldwide. From political science and gender studies to anthropology and urban studies, it has garnered considerable attention across numerous scientific…

Social and Information Networks · Computer Science 2024-10-22 Vini Netto , Kimon Krenz , Maria Fiszon , Otávio Peres , Desirée Rosalino

The majority of big data is unstructured and of this majority the largest chunk is text. While data mining techniques are well developed and standardized for structured, numerical data, the realm of unstructured data is still largely…

Artificial Intelligence · Computer Science 2015-06-24 Carlo A. Trugenberger

Collaborations are an integral part of scientific research and publishing. In the past, access to large-scale corpora has limited the ways in which questions about collaborations could be investigated. However, with improvements in…

Social and Information Networks · Computer Science 2018-09-13 Lovenoor Aulck , Kishore Vasan , Jevin West

Computer science is also an experimental science. This is particularly the case for parallel computing, which is in a total state of flux, and where experiments are necessary to substantiate, complement, and challenge theoretical modeling…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-08-19 Sascha Hunold , Jesper Larsson Träff